Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is trxB [H]
Identifier: 159185092
GI number: 159185092
Start: 2161161
End: 2162135
Strand: Direct
Name: trxB [H]
Synonym: Atu2185
Alternate gene names: 159185092
Gene position: 2161161-2162135 (Clockwise)
Preceding gene: 15889463
Following gene: 15889466
Centisome position: 76.05
GC content: 61.23
Gene sequence:
>975_bases ATGTCTGCCCGCCACACGAAGGTATTGATCATTGGCTCCGGTCCCGCCGGCTATACCGCGGCGATCTACGCGGCCCGCGC AATGCTGAAACCCGTGCTGATTGCCGGCATGGAACAGGGTGGCCAGCTGATGATCACCACCGATGTTGAAAACTACCCGG GCTTCGCCGATCCGATCCAGGGCCCGTGGCTGATGGACCAGATGCTGAAGCAGGCAACCCATGTGGGCGCGGAAATCGTC AGCGACCTCGTCACCGAAGTTGAGACCAACGTGCGGCCTTTCGTGGTCAGGACCGATTCGGGTCAGGTCTGGACCGCCGA CACGCTAATCATCGCAACCGGTGCCAAGGCCAAATGGCTCGGCATCGAGAGCGAGCAGCACTTCCAGGGCTTCGGCGTCT CCGCCTGCGCCACCTGCGACGGGTTTTTCTATCGCAACAAGGATGTGATCGTGGTCGGCGGCGGCAACTCCGCCGTGGAA GAGGCGCTTTATCTCGCGCATATCGCCAAATCGGTCACCGTCGTGCACCGCCGCGACAGCTTCCGCTCGGAAAAAATCCT GCAGGAACGGCTGTTTGCCAAGGAAAACGTCAAGATTCTCTGGAATACGGAAATTGCCGAAATCACCGGCGCACCGGCAA AGCCGCCGATGCCGCCTTCCGTTTCCGGCGTCAGGCTGCGTGACACCAAGACTGGTGCGATCAGCGATACGCCCATTGAT GGCGTTTTTGTCGCCATCGGCCACGCCCCGGCGGTCGAACTGTTCAAGGGCAAGGTGAAGCTCAAGGATAACGGCTACAT GTGGACTGCTCCTGATTCCACGGCCACCGACGTGGAAGGCATCTTCGCCGCCGGCGACGTCACCGACGACATTTACCGCC AGGCAATCACCGCCGCCGGCATGGGCTGCATGGCCGCCCTCGAAGCAGAACGCTATCTCACGGCGCAACAACCGCTCGCG GTTGCAGCGGAATAA
Upstream 100 bases:
>100_bases TTAAATACCGGGCAACGAAGGGGTTGCGGCCTATCCGCCGTCTTGCGGCTGGATGGCTTTGCCGCCGAAAGGCCCCGCTG CTGAAAAAAGGAATATTTCC
Downstream 100 bases:
>100_bases CCGAAAGGCAGGATAGGCATGGCAATGCCATTGGACTGGGATAAACTGCGCATTTTTCATGCCGCAGCCGAAGCGGGGTC TTTTACCCACGCTGCCGACA
Product: thioredoxin reductase
Products: NA
Alternate protein names: TRXR [H]
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MSARHTKVLIIGSGPAGYTAAIYAARAMLKPVLIAGMEQGGQLMITTDVENYPGFADPIQGPWLMDQMLKQATHVGAEIV SDLVTEVETNVRPFVVRTDSGQVWTADTLIIATGAKAKWLGIESEQHFQGFGVSACATCDGFFYRNKDVIVVGGGNSAVE EALYLAHIAKSVTVVHRRDSFRSEKILQERLFAKENVKILWNTEIAEITGAPAKPPMPPSVSGVRLRDTKTGAISDTPID GVFVAIGHAPAVELFKGKVKLKDNGYMWTAPDSTATDVEGIFAAGDVTDDIYRQAITAAGMGCMAALEAERYLTAQQPLA VAAE
Sequences:
>Translated_324_residues MSARHTKVLIIGSGPAGYTAAIYAARAMLKPVLIAGMEQGGQLMITTDVENYPGFADPIQGPWLMDQMLKQATHVGAEIV SDLVTEVETNVRPFVVRTDSGQVWTADTLIIATGAKAKWLGIESEQHFQGFGVSACATCDGFFYRNKDVIVVGGGNSAVE EALYLAHIAKSVTVVHRRDSFRSEKILQERLFAKENVKILWNTEIAEITGAPAKPPMPPSVSGVRLRDTKTGAISDTPID GVFVAIGHAPAVELFKGKVKLKDNGYMWTAPDSTATDVEGIFAAGDVTDDIYRQAITAAGMGCMAALEAERYLTAQQPLA VAAE >Mature_323_residues SARHTKVLIIGSGPAGYTAAIYAARAMLKPVLIAGMEQGGQLMITTDVENYPGFADPIQGPWLMDQMLKQATHVGAEIVS DLVTEVETNVRPFVVRTDSGQVWTADTLIIATGAKAKWLGIESEQHFQGFGVSACATCDGFFYRNKDVIVVGGGNSAVEE ALYLAHIAKSVTVVHRRDSFRSEKILQERLFAKENVKILWNTEIAEITGAPAKPPMPPSVSGVRLRDTKTGAISDTPIDG VFVAIGHAPAVELFKGKVKLKDNGYMWTAPDSTATDVEGIFAAGDVTDDIYRQAITAAGMGCMAALEAERYLTAQQPLAV AAE
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=320, Percent_Identity=54.6875, Blast_Score=341, Evalue=5e-95, Organism=Escherichia coli, GI87081763, Length=315, Percent_Identity=36.1904761904762, Blast_Score=148, Evalue=5e-37, Organism=Saccharomyces cerevisiae, GI6321898, Length=323, Percent_Identity=44.5820433436532, Blast_Score=275, Evalue=7e-75, Organism=Saccharomyces cerevisiae, GI6320560, Length=321, Percent_Identity=44.8598130841121, Blast_Score=274, Evalue=2e-74,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 34701; Mature: 34570
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS00573 PYRIDINE_REDOX_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSARHTKVLIIGSGPAGYTAAIYAARAMLKPVLIAGMEQGGQLMITTDVENYPGFADPIQ CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCC GPWLMDQMLKQATHVGAEIVSDLVTEVETNVRPFVVRTDSGQVWTADTLIIATGAKAKWL CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECEEEEEECCCEEEE GIESEQHFQGFGVSACATCDGFFYRNKDVIVVGGGNSAVEEALYLAHIAKSVTVVHRRDS ECCCHHHHCCCCCHHHEECCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHEEEECCCC FRSEKILQERLFAKENVKILWNTEIAEITGAPAKPPMPPSVSGVRLRDTKTGAISDTPID HHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC GVFVAIGHAPAVELFKGKVKLKDNGYMWTAPDSTATDVEGIFAAGDVTDDIYRQAITAAG EEEEEECCCCEEEEEECEEEEECCCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHCC MGCMAALEAERYLTAQQPLAVAAE CHHHHHHHHHHHHCCCCCEEEECC >Mature Secondary Structure SARHTKVLIIGSGPAGYTAAIYAARAMLKPVLIAGMEQGGQLMITTDVENYPGFADPIQ CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCC GPWLMDQMLKQATHVGAEIVSDLVTEVETNVRPFVVRTDSGQVWTADTLIIATGAKAKWL CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECEEEEEECCCEEEE GIESEQHFQGFGVSACATCDGFFYRNKDVIVVGGGNSAVEEALYLAHIAKSVTVVHRRDS ECCCHHHHCCCCCHHHEECCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHEEEECCCC FRSEKILQERLFAKENVKILWNTEIAEITGAPAKPPMPPSVSGVRLRDTKTGAISDTPID HHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC GVFVAIGHAPAVELFKGKVKLKDNGYMWTAPDSTATDVEGIFAAGDVTDDIYRQAITAAG EEEEEECCCCEEEEEECEEEEECCCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHCC MGCMAALEAERYLTAQQPLAVAAE CHHHHHHHHHHHHCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]