Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185008
Identifier: 159185008
GI number: 159185008
Start: 1961076
End: 1961552
Strand: Reverse
Name: 159185008
Synonym: Atu1998
Alternate gene names: NA
Gene position: 1961552-1961076 (Counterclockwise)
Preceding gene: 15889289
Following gene: 17935883
Centisome position: 69.03
GC content: 57.23
Gene sequence:
>477_bases ATGAATTTCGTGACACGCCGTCTCGCCATTGCTGCTCTTGCCCTCGCGCCCGCGCTGTTGGCCGCCCCCGTTCTGGCGGA AACCGCCAAGCGCGATCTGGCCCAGGAAGAAACCAACCGCAAGCTGGTGATCGATTTTTACGACACCGTCTTCAACAAGC ACGAGGTGGCGAAGGGCGCAGCCGTCATCGTCGACAGCTACAAGCAGCACAATCCGATGGTGCCTGACGGCAAGAAGCCG TTCGTCGATTATTTCACCGGCTTCTTCAAGGAAAACCCGCAGGCAAAATCCCGGATCGTGCGCAGCGCTACGGATGGCGA TCTGGTTTACCTGCATATCCATTCCACGGATAAAGAGGGTGCTCGCGGAGCCGCCATCGTCGATATCTTCAGGGTGACCG ACGGCAAGATCACCGAACATTGGGACGTCATCCAGCCGGTGCCGGAAAAGGCTGCAAACAACAATACGATGTTCTAA
Upstream 100 bases:
>100_bases GTATTTCTTTCGAGGATTACGCCATCGCGCTTGCCGATGAAATCGAGAAGCCGCAACATTCCCGCCAGCGTTTCACCGTC GGTTATTGAGAGGTATCCCC
Downstream 100 bases:
>100_bases GGCAGGCTTCTGCTAAAATGTCAGGAATTCAGAAGCACACGGCCGGGATATACTCTCCCGGCCGTATTTTTTCAGGCTGC GCGTTGCTTCTGGCGGGACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 158; Mature: 158
Protein sequence:
>158_residues MNFVTRRLAIAALALAPALLAAPVLAETAKRDLAQEETNRKLVIDFYDTVFNKHEVAKGAAVIVDSYKQHNPMVPDGKKP FVDYFTGFFKENPQAKSRIVRSATDGDLVYLHIHSTDKEGARGAAIVDIFRVTDGKITEHWDVIQPVPEKAANNNTMF
Sequences:
>Translated_158_residues MNFVTRRLAIAALALAPALLAAPVLAETAKRDLAQEETNRKLVIDFYDTVFNKHEVAKGAAVIVDSYKQHNPMVPDGKKP FVDYFTGFFKENPQAKSRIVRSATDGDLVYLHIHSTDKEGARGAAIVDIFRVTDGKITEHWDVIQPVPEKAANNNTMF >Mature_158_residues MNFVTRRLAIAALALAPALLAAPVLAETAKRDLAQEETNRKLVIDFYDTVFNKHEVAKGAAVIVDSYKQHNPMVPDGKKP FVDYFTGFFKENPQAKSRIVRSATDGDLVYLHIHSTDKEGARGAAIVDIFRVTDGKITEHWDVIQPVPEKAANNNTMF
Specific function: Unknown
COG id: COG4922
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17553; Mature: 17553
Theoretical pI: Translated: 7.88; Mature: 7.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFVTRRLAIAALALAPALLAAPVLAETAKRDLAQEETNRKLVIDFYDTVFNKHEVAKGA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCHHHHHCCH AVIVDSYKQHNPMVPDGKKPFVDYFTGFFKENPQAKSRIVRSATDGDLVYLHIHSTDKEG HEEEECHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEECCCCCC ARGAAIVDIFRVTDGKITEHWDVIQPVPEKAANNNTMF CCCCEEEEEEECCCCCCCCCCHHHCCCCHHCCCCCCCC >Mature Secondary Structure MNFVTRRLAIAALALAPALLAAPVLAETAKRDLAQEETNRKLVIDFYDTVFNKHEVAKGA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCHHHHHCCH AVIVDSYKQHNPMVPDGKKPFVDYFTGFFKENPQAKSRIVRSATDGDLVYLHIHSTDKEG HEEEECHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEECCCCCC ARGAAIVDIFRVTDGKITEHWDVIQPVPEKAANNNTMF CCCCEEEEEEECCCCCCCCCCHHHCCCCHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA