Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is cysJ
Identifier: 159185007
GI number: 159185007
Start: 1959640
End: 1961004
Strand: Direct
Name: cysJ
Synonym: Atu1997
Alternate gene names: NA
Gene position: 1959640-1961004 (Clockwise)
Preceding gene: 159185006
Following gene: 159185009
Centisome position: 68.96
GC content: 60.0
Gene sequence:
>1365_bases ATGTCCGTCACGACCTCTTTCGAGGGCGAGCGCGCACCTGCGCAGTCGTCATCCATCAATCTTTACCGCGCCGTGTGGCG CTGGCATTTTTACGCCGGTCTGCTCGTCCTGCCCTTCATGATATCGCTCGCCGTCACCGGCGCGCTTTATCTCTTCCGGG ATGAATTCGACAATCTCATCCATTCCGATCTGAAGCGGGTGGAGGTGGTGCAGAACGCACCGAAAGCGCTTCCTTCCGAA ATCATCGCCGCGGCGCTGGCAGCCGTGCCCGGTACCGCCGTCAAATATACGACATCAGCCGATCCGGGTGCATCCACGGA AATCACCGTCGATACGGAGGACGGCAAGCGGGCGGTTTACGTCAATCCCTATACGGCTGAGGTTGCCGGTTCGCTGCCCG ATCGCGGCACTATCATGTGGACGATCCGTTATCTCCACAGCCTGAAATATTTCGGCACCTATGCCCGTTATCTGATCGAG ATCGCCGCGGGCTGGTCAATCCTTCTCGTTGCGACCGGCATCTATCTCTGGTGGCCGCGCAAGCAGACGGGCGGTGTCGT CACCGTGCGCGGCACGCCGAAGAAGCGCGTGTTCTGGCGCGATACCCATGCCGTCACCGGCATTTTCGTCGGCTTTTTCA TCGTCTTCCTTGCGGTCACCGGCATGCCCTGGTCGGGCGTCTGGGGCGCGAAGGTCAATGAATGGGCAAATGGCAGCAAT TTCGGATATCCGGCCGGCGTGCGTACGGATGTTCCCATGTCCGGCGAACATCTCGATCACATAGCCAAGAACAGCTGGTC GCTGGAACAGGCGAAGGTCCCGGAATCCACCGCATCCGCCACCGGGCAACCAATCGGAATAAATGCGGCCATAGCACGTT TCGACGGACTTGGTCTTGCTGCTGGTTATGCCGTCGCGCTGCCGACCAAACCCACCGGCGTCTATAGCGGCTCGGTCTAT CCCGACGACCTTTCAAAGCAGCGTGTCGTCCATCTCGATCAATATAGCGGCGAGCCGCTGATCGACATGCGCTATGCCGA TTACGGTCCGCTTGGAAAGGCGCTGGAATGGGGGATAAATGTCCATATGGGCCAGCAATTCGGCCTCGCCAACCAGATCG TACTGCTGGCAGCGTGTTTCGGCATCGTCCTGCTTGCCGTTTCCGCCGGCATCATGTGGTGGAAACGACGCCCCAGAGGT TCGCTCGGCGTGCCACCCTTGCCGCAGGATAAACGCGTCCTGCGCGGCCTGCTCGCCATGCTTGCCATCGGCGGCATCCT GTTCCCCCTGGTTGGCGCAAGCCTACTGATCATGCTTGTTCTGGATCAGATCGTACAGTCCCGCCAGAAGCAACGCGCAG CCTGA
Upstream 100 bases:
>100_bases CGCCACCCAATCTGGAATCGCGTCCACGCGCACCACCCACCTCTCCGCACGCTTGAGACCTCCCCGGCCCGCCGGAATCC AATCTTTTGCGGAGACATTC
Downstream 100 bases:
>100_bases AAAAATACGGCCGGGAGAGTATATCCCGGCCGTGTGCTTCTGAATTCCTGACATTTTAGCAGAAGCCTGCCTTAGAACAT CGTATTGTTGTTTGCAGCCT
Product: sulfite reductase
Products: NA
Alternate protein names: PepSY-Associated TM Helix Domain Protein; Iron-Regulated Membrane Protein; Sulfite Reductase; PepSY-Associated TM Helix Domain-Containing Protein; PepSY-Associated TM Helix Family; Peptidase; PepSY-Associated Membrane Protein; PepSY-Associated TM Helix; PepSY-Associated TM Helix Containing Protein; Pepsy-Associated Tm Helix Domain Protein; Outer Membrane Protein; Transmembrane Protein; PepSY Amd Peptidase M4 Protein; M4 Family Peptidase; Bifunctional Sulfite Reductase; PepSY-Associated TM Helix Family Protein; Sulfite Reductase Flavoprotein Subunit Alpha; Transmembrane Transporter
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MSVTTSFEGERAPAQSSSINLYRAVWRWHFYAGLLVLPFMISLAVTGALYLFRDEFDNLIHSDLKRVEVVQNAPKALPSE IIAAALAAVPGTAVKYTTSADPGASTEITVDTEDGKRAVYVNPYTAEVAGSLPDRGTIMWTIRYLHSLKYFGTYARYLIE IAAGWSILLVATGIYLWWPRKQTGGVVTVRGTPKKRVFWRDTHAVTGIFVGFFIVFLAVTGMPWSGVWGAKVNEWANGSN FGYPAGVRTDVPMSGEHLDHIAKNSWSLEQAKVPESTASATGQPIGINAAIARFDGLGLAAGYAVALPTKPTGVYSGSVY PDDLSKQRVVHLDQYSGEPLIDMRYADYGPLGKALEWGINVHMGQQFGLANQIVLLAACFGIVLLAVSAGIMWWKRRPRG SLGVPPLPQDKRVLRGLLAMLAIGGILFPLVGASLLIMLVLDQIVQSRQKQRAA
Sequences:
>Translated_454_residues MSVTTSFEGERAPAQSSSINLYRAVWRWHFYAGLLVLPFMISLAVTGALYLFRDEFDNLIHSDLKRVEVVQNAPKALPSE IIAAALAAVPGTAVKYTTSADPGASTEITVDTEDGKRAVYVNPYTAEVAGSLPDRGTIMWTIRYLHSLKYFGTYARYLIE IAAGWSILLVATGIYLWWPRKQTGGVVTVRGTPKKRVFWRDTHAVTGIFVGFFIVFLAVTGMPWSGVWGAKVNEWANGSN FGYPAGVRTDVPMSGEHLDHIAKNSWSLEQAKVPESTASATGQPIGINAAIARFDGLGLAAGYAVALPTKPTGVYSGSVY PDDLSKQRVVHLDQYSGEPLIDMRYADYGPLGKALEWGINVHMGQQFGLANQIVLLAACFGIVLLAVSAGIMWWKRRPRG SLGVPPLPQDKRVLRGLLAMLAIGGILFPLVGASLLIMLVLDQIVQSRQKQRAA >Mature_453_residues SVTTSFEGERAPAQSSSINLYRAVWRWHFYAGLLVLPFMISLAVTGALYLFRDEFDNLIHSDLKRVEVVQNAPKALPSEI IAAALAAVPGTAVKYTTSADPGASTEITVDTEDGKRAVYVNPYTAEVAGSLPDRGTIMWTIRYLHSLKYFGTYARYLIEI AAGWSILLVATGIYLWWPRKQTGGVVTVRGTPKKRVFWRDTHAVTGIFVGFFIVFLAVTGMPWSGVWGAKVNEWANGSNF GYPAGVRTDVPMSGEHLDHIAKNSWSLEQAKVPESTASATGQPIGINAAIARFDGLGLAAGYAVALPTKPTGVYSGSVYP DDLSKQRVVHLDQYSGEPLIDMRYADYGPLGKALEWGINVHMGQQFGLANQIVLLAACFGIVLLAVSAGIMWWKRRPRGS LGVPPLPQDKRVLRGLLAMLAIGGILFPLVGASLLIMLVLDQIVQSRQKQRAA
Specific function: Unknown
COG id: COG3182
COG function: function code S; Uncharacterized iron-regulated membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49397; Mature: 49265
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVTTSFEGERAPAQSSSINLYRAVWRWHFYAGLLVLPFMISLAVTGALYLFRDEFDNLI CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HSDLKRVEVVQNAPKALPSEIIAAALAAVPGTAVKYTTSADPGASTEITVDTEDGKRAVY HHHHHHHHHHHHCHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCEEEE VNPYTAEVAGSLPDRGTIMWTIRYLHSLKYFGTYARYLIEIAAGWSILLVATGIYLWWPR ECCCHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHEEECC KQTGGVVTVRGTPKKRVFWRDTHAVTGIFVGFFIVFLAVTGMPWSGVWGAKVNEWANGSN CCCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC FGYPAGVRTDVPMSGEHLDHIAKNSWSLEQAKVPESTASATGQPIGINAAIARFDGLGLA CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCHHHHCCCCCCCCHHHHHHHCCCCEE AGYAVALPTKPTGVYSGSVYPDDLSKQRVVHLDQYSGEPLIDMRYADYGPLGKALEWGIN CCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCHHHHCCCE VHMGQQFGLANQIVLLAACFGIVLLAVSAGIMWWKRRPRGSLGVPPLPQDKRVLRGLLAM EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH LAIGGILFPLVGASLLIMLVLDQIVQSRQKQRAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SVTTSFEGERAPAQSSSINLYRAVWRWHFYAGLLVLPFMISLAVTGALYLFRDEFDNLI CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HSDLKRVEVVQNAPKALPSEIIAAALAAVPGTAVKYTTSADPGASTEITVDTEDGKRAVY HHHHHHHHHHHHCHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCEEEE VNPYTAEVAGSLPDRGTIMWTIRYLHSLKYFGTYARYLIEIAAGWSILLVATGIYLWWPR ECCCHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHEEECC KQTGGVVTVRGTPKKRVFWRDTHAVTGIFVGFFIVFLAVTGMPWSGVWGAKVNEWANGSN CCCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC FGYPAGVRTDVPMSGEHLDHIAKNSWSLEQAKVPESTASATGQPIGINAAIARFDGLGLA CCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCHHHHCCCCCCCCHHHHHHHCCCCEE AGYAVALPTKPTGVYSGSVYPDDLSKQRVVHLDQYSGEPLIDMRYADYGPLGKALEWGIN CCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCHHHHCCCE VHMGQQFGLANQIVLLAACFGIVLLAVSAGIMWWKRRPRGSLGVPPLPQDKRVLRGLLAM EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH LAIGGILFPLVGASLLIMLVLDQIVQSRQKQRAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA