Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184999
Identifier: 159184999
GI number: 159184999
Start: 1942546
End: 1943334
Strand: Reverse
Name: 159184999
Synonym: Atu1975
Alternate gene names: NA
Gene position: 1943334-1942546 (Counterclockwise)
Preceding gene: 15889276
Following gene: 15889267
Centisome position: 68.39
GC content: 59.44
Gene sequence:
>789_bases ATGTTGTCTGTGATACTGACGCTTGCCATTCTCATATCGCTTCTTATGGCAGGCGCGTGGGCGTTGCAGAGAGCAACCGG TTCGAGCGGCTGGATCGACACCGTCTGGTCGGCGAGTGTCGGGCTTGGCGGCGTTCTGGCTGTTTTATTCGCGGAAGGAG ATGGCTGGCGGCGTGCGGTCGTATTTTTCCTAGTCGTGGTCTGGTCGTTGCGGCTTGCCGGTCACATCGGCATGCGCACG CGAGGCGGCGGAGAAGATCCCCGTTATGCCAAGCTGATCGAGGAGTGGGGGAGCGCCGCCTCTCTCAGACTTTTCATCTT CCTCCAGATACAGGCCATCGCCGCCTTCATTCTCGTTCTCGCGGTTTATCTAGCTACCGGCAACGGCCAGGTTTTCCCGC GTGTCATCGATGTTTTCGCCACGGTGGTCGCTTTGACCGCACTGGCCGGTGAAGCGCTCTCGGATGCCCAGCTTTCAAAA TTCCGGAGAACGCCGGAAGCGAAGACGGGTGTCTGCGAAACCGGCCTCTGGCGTTATTCCCGCCACCCCAATTATTTCTT CGAATGGCTTTTCTGGTGCAGTTTCCCGCTGCTTGCCATTCAGGAACAGGTCTTGTCCTGGGCGTCGCTCGCCGCACCCG TCATGATGTACTGGCTGCTCGTCCACGTCTCCGGCATTCCGCCGCTTGAAGAGCACATGCTGAAATCGCGCGGAGAGAAA TTCCGCGCCCTGCAACGCCGCGTCAACGCCTTCTTTCCGGGGCCGCGCAAGAACGAGGAAACGCCATGA
Upstream 100 bases:
>100_bases TTTGGAATCTTTTCCGAAACCTGAAACTCTTTTGCCGGTTCGGTCGTATTTGCCATCACGAAACCTGTCTCCATCTGTTC AAACGGTGAGCGAAGTAGTG
Downstream 100 bases:
>100_bases ACATGCTTGCCTTCGCCATCAATGCCGCAGAACGCGCACCGCTCAACGACGGCGTCACGCTGGCTGGTATAGATATGCTC TGCGCACGAACGAAACGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MLSVILTLAILISLLMAGAWALQRATGSSGWIDTVWSASVGLGGVLAVLFAEGDGWRRAVVFFLVVVWSLRLAGHIGMRT RGGGEDPRYAKLIEEWGSAASLRLFIFLQIQAIAAFILVLAVYLATGNGQVFPRVIDVFATVVALTALAGEALSDAQLSK FRRTPEAKTGVCETGLWRYSRHPNYFFEWLFWCSFPLLAIQEQVLSWASLAAPVMMYWLLVHVSGIPPLEEHMLKSRGEK FRALQRRVNAFFPGPRKNEETP
Sequences:
>Translated_262_residues MLSVILTLAILISLLMAGAWALQRATGSSGWIDTVWSASVGLGGVLAVLFAEGDGWRRAVVFFLVVVWSLRLAGHIGMRT RGGGEDPRYAKLIEEWGSAASLRLFIFLQIQAIAAFILVLAVYLATGNGQVFPRVIDVFATVVALTALAGEALSDAQLSK FRRTPEAKTGVCETGLWRYSRHPNYFFEWLFWCSFPLLAIQEQVLSWASLAAPVMMYWLLVHVSGIPPLEEHMLKSRGEK FRALQRRVNAFFPGPRKNEETP >Mature_262_residues MLSVILTLAILISLLMAGAWALQRATGSSGWIDTVWSASVGLGGVLAVLFAEGDGWRRAVVFFLVVVWSLRLAGHIGMRT RGGGEDPRYAKLIEEWGSAASLRLFIFLQIQAIAAFILVLAVYLATGNGQVFPRVIDVFATVVALTALAGEALSDAQLSK FRRTPEAKTGVCETGLWRYSRHPNYFFEWLFWCSFPLLAIQEQVLSWASLAAPVMMYWLLVHVSGIPPLEEHMLKSRGEK FRALQRRVNAFFPGPRKNEETP
Specific function: Unknown
COG id: COG3752
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI281365853, Length=195, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI28574404, Length=195, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21355723, Length=195, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29055; Mature: 29055
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: PS50244 S5A_REDUCTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSVILTLAILISLLMAGAWALQRATGSSGWIDTVWSASVGLGGVLAVLFAEGDGWRRAV CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHH VFFLVVVWSLRLAGHIGMRTRGGGEDPRYAKLIEEWGSAASLRLFIFLQIQAIAAFILVL HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH AVYLATGNGQVFPRVIDVFATVVALTALAGEALSDAQLSKFRRTPEAKTGVCETGLWRYS HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC RHPNYFFEWLFWCSFPLLAIQEQVLSWASLAAPVMMYWLLVHVSGIPPLEEHMLKSRGEK CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHH FRALQRRVNAFFPGPRKNEETP HHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MLSVILTLAILISLLMAGAWALQRATGSSGWIDTVWSASVGLGGVLAVLFAEGDGWRRAV CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHH VFFLVVVWSLRLAGHIGMRTRGGGEDPRYAKLIEEWGSAASLRLFIFLQIQAIAAFILVL HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH AVYLATGNGQVFPRVIDVFATVVALTALAGEALSDAQLSKFRRTPEAKTGVCETGLWRYS HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC RHPNYFFEWLFWCSFPLLAIQEQVLSWASLAAPVMMYWLLVHVSGIPPLEEHMLKSRGEK CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHH FRALQRRVNAFFPGPRKNEETP HHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA