Click here to switch to the map view.

The map label for this gene is ssb

Identifier: 159184791

GI number: 159184791

Start: 1501563

End: 1502084

Strand: Reverse

Name: ssb

Synonym: Atu1512

Alternate gene names: 159184791

Gene position: 1502084-1501563 (Counterclockwise)

Preceding gene: 15888840

Following gene: 15888836

Centisome position: 52.86

GC content: 61.3

Gene sequence:

>522_bases
ATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAATGTCGGCGCCGATCCCGAAATCCGCCGGACGCAGGATGGCCG
CCCCATCGCCAACCTGCGTATCGCCACCTCGGAAACCTGGCGCGACCGCAACAGCGGTGAGCGCAAGGAAAAGACCGAAT
GGCACACCGTCGTGGTTTTCAACGAAGGCCTGTGCAAGGTCGTCGAACAATATGTCAAGAAGGGCGCCAAGCTCTATATT
GAAGGCCAGCTGCAGACGCGCAAATGGCAGGACCAGACCGGCAACGACCGCTACTCCACCGAAATCGTGCTGCAGGGCTT
CAACTCCACGCTGACGATGCTCGACGGTCGCGGTGAAGGCGGTGGTGGTCGCAGCGGTGGCGGCGATTTCGGCGGTGGCA
ATGATTATGGCAGCGGCGGCGGTTACGACCAGCAGTCCTCGCCGCGCGGCGGCTCATCCCGTGGCGGCGGCCAGCCTTCC
GGTGGCTTCTCCAACGATATGGATGACGATATTCCGTTCTGA

Upstream 100 bases:

>100_bases
CCCTGCCTGCGGTGCCCTTTGCGGGCGGTGGTGGTTATTGTGTGCGGGATTTTTTGAAATGCAATTGCCGGTCATGAAGG
CTGGCGGACAGGATGACGAG

Downstream 100 bases:

>100_bases
GGCTGATACTGTCGACACTGCCGCAAGTCAGAATTTTGTGGTTTTTTCGATGTATTGATATCATCATCGGGCTGACAGGA
GATTTGAGACATGGCGAACA

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGGRSGGGDFGGGNDYGSGGGYDQQSSPRGGSSRGGGQPS
GGFSNDMDDDIPF

Sequences:

>Translated_173_residues
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGGRSGGGDFGGGNDYGSGGGYDQQSSPRGGSSRGGGQPS
GGFSNDMDDDIPF
>Mature_172_residues
AGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCKVVEQYVKKGAKLYIE
GQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGGRSGGGDFGGGNDYGSGGGYDQQSSPRGGSSRGGGQPSG
GFSNDMDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain

Homologues:

Organism=Homo sapiens, GI4507231, Length=108, Percent_Identity=37.037037037037, Blast_Score=78, Evalue=4e-15,
Organism=Escherichia coli, GI1790494, Length=184, Percent_Identity=47.2826086956522, Blast_Score=142, Evalue=1e-35,
Organism=Drosophila melanogaster, GI85725234, Length=100, Percent_Identity=37, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24647376, Length=100, Percent_Identity=37, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SSB_AGRT5 (Q8UF87)

Other databases:

- EMBL:   AE007869
- PIR:   AG2762
- PIR:   F97543
- RefSeq:   NP_354518.2
- ProteinModelPortal:   Q8UF87
- SMR:   Q8UF87
- STRING:   Q8UF87
- GeneID:   1133550
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1512
- eggNOG:   COG0629
- HOGENOM:   HBG755544
- OMA:   IATSENW
- PhylomeDB:   Q8UF87
- ProtClustDB:   PRK06341
- BioCyc:   ATUM176299-1:ATU1512-MONOMER
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10302
- TIGRFAMs:   TIGR00621

Pfam domain/function: PF00436 SSB; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 18583; Mature: 18451

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVF
CCCCCCEEEEEECCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE
NEGLCKVVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEG
CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCC
GGGRSGGGDFGGGNDYGSGGGYDQQSSPRGGSSRGGGQPSGGFSNDMDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVF
CCCCCEEEEEECCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE
NEGLCKVVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEG
CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCC
GGGRSGGGDFGGGNDYGSGGGYDQQSSPRGGSSRGGGQPSGGFSNDMDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194