Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is gyrA [H]
Identifier: 159184789
GI number: 159184789
Start: 1495961
End: 1498681
Strand: Reverse
Name: gyrA [H]
Synonym: Atu1507
Alternate gene names: 159184789
Gene position: 1498681-1495961 (Counterclockwise)
Preceding gene: 159184790
Following gene: 15888828
Centisome position: 52.74
GC content: 61.23
Gene sequence:
>2721_bases ATGCAGCGGTCGTATCTCGATTACGCCATGAGCGTCATCGTGTCCCGCGCGCTTCCCGATGTGCGAGACGGCCTGAAGCC GGTTCATCGCCGTATCCTCTACGGCATGTCCGAACTCGGCATCGACTGGAACAAGAAATACGTCAAATGCGCCCGCGTCA CCGGTGACGTGATGGGTAAATTCCATCCGCACGGCAATTCGGCGATCTATGACGCGCTGGCGCGTATGGCGCAGGATTGG TCGCTGCGTCTGCCGCTGATTGACGGACAGGGCAATTTCGGCTCCATCGATGGCGATCCGCCGGCGGCCGAACGTTACAC CGAATGCCGTCTCGAAAAGGCCGCGCATTCTCTGCTCGACGATCTCGACAAGGAAACGGTCGATTTCCGCGACAACTATG ACGGCACGCTGCAGGAGCCGGTTGTCGTTCCCGCGAAGTTCCCGAACCTTCTGGTCAACGGGGCAGGCGGCATCGCGGTG GGCATGGCCACCAATATTCCGCCGCACAATCTGTCCGAGGTTATCGACGGCTGCGTCGCGCTGATTGAAAATCCGGCGAT CGAACTGCCCGAGATGATGCAGATCATTCCCGGACCGGATTTTCCGACCGGCGCGCTGATCATGGGCCGTTCAGGCATCC GCTCGGCTTATGAGACCGGCCGTGGATCGGTCATCATGCGCGGCGTCGCCACCATCGAGCCGATGCGCGGCGACCGCGAA CAGATCATCATCACCGAAGTTCCCTATCAGGTGAACAAGGCCTCGATGATCGAAAAGATGGCCGAGCTGGTCAAGGAAAA GCGCATCGAGGGCATTTCCGACCTGCGCGACGAGTCCGACCGCCAGGGTTATCGCGTCGTCATCGAACTGAAGCGCGATG CCAATGCCGAAGTCATCCTGAACCAGCTTTATCGCTACACGCCGCTGCAGACCTCCTTCGGCTGCAACATGGTGGCGCTG AACGGCGGCAAGCCGGAACAGATGACGCTGCTCGACATGCTGCGGGCCTTCGTTTCCTTCCGTGAAGACGTCGTCAGCCG CCGCACCAAGTATCTGCTGCGCAAGGCACGCGACCGCGCGCATGTCTTGGTCGGTCTGGCGATTTCGGTCGCCAATATCG ACGAAGTCATCCGCGTCATCCGTCATGCTCCCGATCCGGCTTCGGCCCGCGAGCAGTTGATGACCCGGCGCTGGCCGGCG CAGGATGTGGAAAGCCTGATCCGTCTCATTGACGATCCGCGCCACCGCATCAACGAAGACGGCACCTACAATCTTTCCGA AGAGCAGGCGCGCGCCATTCTCGAATTGCGCCTTGCCCGCCTCACCGCGCTTGGCCGCGATGAGATCGGCGACGAGCTGA ACAAGATCGGCGCTGAAATCAGCGAGTATCTGGACATTCTGTCGTCGCGCGTGCGTATCCAGCAGATCGTCAAGGACGAA CTTGTTTCGATCCGCGACGAGTTCGGCACGCCGCGCCGGTCGCAGATCGTCGAGGGTGGTCCTGACATGGACGATGAAGA CCTCATCGCCCGCGAGGATATGGTCGTTACCGTTTCGCATCTCGGTTACATCAAGCGCGTACCGCTGACCACCTACCGGG CGCAGCGCCGCGGCGGCAAGGGCCGTTCCGGCATGGCGACGCGCGACGAGGATTTCGTCAACCGTCTCTTTGTTGCCAAT ACCCATACGCCGGTGCTGTTTTTCTCCTCGCGTGGCATCGTCTACAAGGAAAAGGTCTGGCGCCTGCCGATCGGTACACC GCAATCCAAGGGCAAGGCCCTCATCAACATGCTGCCGCTGGAGCCCGGCGAACGCATCACCACCATCATGCCGTTGCCCG AGGATGAGACCGCCTGGGAAACGCTGGATGTGATGTTCTCGACGACGCGCGGTACGGTTCGCCGCAACAAGCTCGGCGAT TTCGTTCAGGTCAACCGCAATGGCAAGATCGCCATGAAGCTGGACGAGGAGGGCGATGAAATCCTCTCCGTCGAAACCTG TACCGATCGTGACGACGTGTTGCTGACGACAGCGCTCGGCCAGTGCATCCGCTTCCCCGTGGACGATGTGCGCGTCTTTG CCGGCCGCAACTCCGTCGGCGTGCGTGGCATCAACATGGCTGAGGGCGACCGCATCATCTCCATGACCATCGTTGGCCAT GTGGAAGCCGAACCGTGGGAACGTGCCGCCTACCTCAAGCGCTCGGCCACCGAGCGCCGTGCCGCTGGCGTGGACGAGGA AGATATCGCACTCGTCGGCGAGGAAGTGACGGAAGAGGGCGAACTCAGCGAAGAGCGTTATCAGGAGCTGAAGGCCCGCG AAGAATTCGTGCTGACGGTTTCCGTGAAGGGCTTCGGCAAACGTTCGTCTTCTTACGACTTCCGCACCTCGGGCCGTGGC GGCAAGGGCATCCGTGCCACCGATACCGCCAAGACCAACGAAATCGGCGAACTCGTCGCTGCCTTCCCGGTGGAAGAGGG CGACCAGATCATGCTGGTTTCCGATGGTGGTCAGCTCATTCGTGTGCCGGTCAACGGCATCCGCATCGCCAGCCGTGCCA CCAAGGGCGTCACGATCTTCTCGACCGCCAAGGACGAGAAAGTGGTTTCCGTGGAGCGCATCAACGAGCCTGAGGGCGAC GATGAGGCGGAGAACGGCAATGACGACGAGGCGGATGATAATCTGCCGGATGCGCCTGAAGCACCGGAGAGCGAGGCGTA A
Upstream 100 bases:
>100_bases CGATTCTTAACAGAGAATGTGATCCGTTTTGACTGACCAGAGCCCCCCCGGCGGCGGAAAACTTCCGCCAGGCATTGAAC CGATTTCCATCATGGAGGAA
Downstream 100 bases:
>100_bases GCCGCCTCGTTTCTGCTTCGCCAATCAACAGAAAACCCCGCGGTGCTTGAGCGCCGCGGGGTTTTTCTTTGGGTCTTGCT TGCTGCGTCCGGTTCGTTAC
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 906; Mature: 906
Protein sequence:
>906_residues MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQDW SLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAV GMATNIPPHNLSEVIDGCVALIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVAL NGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPA QDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVKDE LVSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVNRLFVAN THTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPLEPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGD FVQVNRNGKIAMKLDEEGDEILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGH VEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTVSVKGFGKRSSSYDFRTSGRG GKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGD DEAENGNDDEADDNLPDAPEAPESEA
Sequences:
>Translated_906_residues MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQDW SLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAV GMATNIPPHNLSEVIDGCVALIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVAL NGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPA QDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVKDE LVSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVNRLFVAN THTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPLEPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGD FVQVNRNGKIAMKLDEEGDEILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGH VEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTVSVKGFGKRSSSYDFRTSGRG GKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGD DEAENGNDDEADDNLPDAPEAPESEA >Mature_906_residues MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQDW SLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAV GMATNIPPHNLSEVIDGCVALIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVAL NGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPA QDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVKDE LVSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVNRLFVAN THTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPLEPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGD FVQVNRNGKIAMKLDEEGDEILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGH VEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTVSVKGFGKRSSSYDFRTSGRG GKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGD DEAENGNDDEADDNLPDAPEAPESEA
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=350, Percent_Identity=25.7142857142857, Blast_Score=88, Evalue=3e-17, Organism=Homo sapiens, GI19913408, Length=351, Percent_Identity=24.7863247863248, Blast_Score=88, Evalue=5e-17, Organism=Escherichia coli, GI1788562, Length=726, Percent_Identity=54.5454545454545, Blast_Score=788, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=724, Percent_Identity=36.1878453038674, Blast_Score=409, Evalue=1e-115, Organism=Caenorhabditis elegans, GI212645845, Length=359, Percent_Identity=25.3481894150418, Blast_Score=75, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6324241, Length=177, Percent_Identity=28.8135593220339, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17136538, Length=352, Percent_Identity=24.7159090909091, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 100836; Mature: 100836
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD CCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA HHCHHHCCCCCCCCCCCCCCEECCCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHH LIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE HHCCCCCCCHHHHHHCCCCCCCCCEEEECCHHHHHHHHCCCCCEEEEEHHHCCCCCCCCC QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVIL EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCCCCHHHHH NQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRA HHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH HVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRINED EEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCC GTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVKDE CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGK HHHHHHHHCCCHHHHHCCCCCCCCCCHHHCCCCEEEEEHHCCCHHCCCCHHHHHHHCCCC GRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPL CCCCCCCCCHHHHHHEEEECCCCCEEEECCCCEEEECCEEECCCCCCCCCCCEEEEEECC EPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKLDEEGDE CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHCCCCEEEECCCCEEEEEECCCCCC ILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGH EEEEEECCCCCCEEEHHHHHHHHHCCHHHEEEEECCCCCCEEECEECCCCEEEEEEEEEE VEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTV CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHCCCCCCCHHHHHHHHCCCEEEEEE SVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLI EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEE RVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDDEAENGNDDEADDNLPDAPE EECCCCEEEECCCCCCEEEEECCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC APESEA CCCCCC >Mature Secondary Structure MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD CCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA HHCHHHCCCCCCCCCCCCCCEECCCCCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHHH LIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE HHCCCCCCCHHHHHHCCCCCCCCCEEEECCHHHHHHHHCCCCCEEEEEHHHCCCCCCCCC QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVIL EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCCCCHHHHH NQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRA HHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH HVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRINED EEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCC GTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVKDE CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGK HHHHHHHHCCCHHHHHCCCCCCCCCCHHHCCCCEEEEEHHCCCHHCCCCHHHHHHHCCCC GRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPL CCCCCCCCCHHHHHHEEEECCCCCEEEECCCCEEEECCEEECCCCCCCCCCCEEEEEECC EPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKLDEEGDE CCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHCCCCEEEECCCCEEEEEECCCCCC ILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGH EEEEEECCCCCCEEEHHHHHHHHHCCHHHEEEEECCCCCCEEECEECCCCEEEEEEEEEE VEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTV CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHCCCCCCCHHHHHHHHCCCEEEEEE SVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLI EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEE RVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDDEAENGNDDEADDNLPDAPE EECCCCEEEECCCCCCEEEEECCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC APESEA CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA