Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184765
Identifier: 159184765
GI number: 159184765
Start: 1449024
End: 1449611
Strand: Reverse
Name: 159184765
Synonym: Atu1453
Alternate gene names: NA
Gene position: 1449611-1449024 (Counterclockwise)
Preceding gene: 159184768
Following gene: 159184764
Centisome position: 51.01
GC content: 56.12
Gene sequence:
>588_bases TTGACCAGCCAGTCGCTCGCCGCCCGCCTCCTCGATGTTATCGAACACGAAATCCTGCCCCTGACGGCTCGCGGCGTCAG CCTCGGCAACAAGGTTTTCGGAGCGGCGATCCTGCGCAAATCAGATCTGTCGCTCGTCGTTGCCGAGACCAATAATGAGC TGGAGAATCCGCTCTGGCATGGTGAAGTGCATACGCTGAAGCGATTTTACGAGCTGGGCGAAAAGCCGAATACCAAGGAC CTGATTTTCCTCTCCACCCACGAACCCTGCACCATGTGCATGTCGGCCATCACCTGGGCCGGCTTCGATAATTTCTATTC CTTCTTCAGCCACGAGGATTCGCGCGACGCTTTCGCGATCCCGCACGACCTGAAAATCCTCAAGGAAGTTTTCGGGCTGG AGCCGGGCGGATATCGCCGCAGCAACGCCTTCTGGAATTCTTTCTTCGTCGCCGATCTGGTGGAGAGCGAAGACGATCCG TTGAAAACCACGCTGAAGGCCCAGACGGCCCGCATCAAGGCCGCTTATGATGATCTCTCCACCACCTATCAATCATCCAA GAGCGACAACGATATTCCGCTGAATTAA
Upstream 100 bases:
>100_bases TGACAAAGCGGGTGCCCGCGCCGAACAAGGAATGACAATCACCTGTCGATTTTCCCATGCGAAGACCGCTTTCCTCAAAG CGGAACGAAGGATCAGACCC
Downstream 100 bases:
>100_bases GCATTTCCAGGGAAAACTGCGTAGCGGTTTTCCGCCCGGACAATGCGTAATATTAAAAATGAAGGTTTAGACACGATGGA AGCCTCGAAGGATATTTCCC
Product: hypothetical protein
Products: NA
Alternate protein names: Deoxycytidylate Deaminase Family Protein; DCMP Deaminase
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MTSQSLAARLLDVIEHEILPLTARGVSLGNKVFGAAILRKSDLSLVVAETNNELENPLWHGEVHTLKRFYELGEKPNTKD LIFLSTHEPCTMCMSAITWAGFDNFYSFFSHEDSRDAFAIPHDLKILKEVFGLEPGGYRRSNAFWNSFFVADLVESEDDP LKTTLKAQTARIKAAYDDLSTTYQSSKSDNDIPLN
Sequences:
>Translated_195_residues MTSQSLAARLLDVIEHEILPLTARGVSLGNKVFGAAILRKSDLSLVVAETNNELENPLWHGEVHTLKRFYELGEKPNTKD LIFLSTHEPCTMCMSAITWAGFDNFYSFFSHEDSRDAFAIPHDLKILKEVFGLEPGGYRRSNAFWNSFFVADLVESEDDP LKTTLKAQTARIKAAYDDLSTTYQSSKSDNDIPLN >Mature_194_residues TSQSLAARLLDVIEHEILPLTARGVSLGNKVFGAAILRKSDLSLVVAETNNELENPLWHGEVHTLKRFYELGEKPNTKDL IFLSTHEPCTMCMSAITWAGFDNFYSFFSHEDSRDAFAIPHDLKILKEVFGLEPGGYRRSNAFWNSFFVADLVESEDDPL KTTLKAQTARIKAAYDDLSTTYQSSKSDNDIPLN
Specific function: Unknown
COG id: COG0590
COG function: function code FJ; Cytosine/adenosine deaminases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21921; Mature: 21790
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00903 CYT_DCMP_DEAMINASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSQSLAARLLDVIEHEILPLTARGVSLGNKVFGAAILRKSDLSLVVAETNNELENPLWH CCHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC GEVHTLKRFYELGEKPNTKDLIFLSTHEPCTMCMSAITWAGFDNFYSFFSHEDSRDAFAI CHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEC PHDLKILKEVFGLEPGGYRRSNAFWNSFFVADLVESEDDPLKTTLKAQTARIKAAYDDLS CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH TTYQSSKSDNDIPLN HHHHCCCCCCCCCCC >Mature Secondary Structure TSQSLAARLLDVIEHEILPLTARGVSLGNKVFGAAILRKSDLSLVVAETNNELENPLWH CHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC GEVHTLKRFYELGEKPNTKDLIFLSTHEPCTMCMSAITWAGFDNFYSFFSHEDSRDAFAI CHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEC PHDLKILKEVFGLEPGGYRRSNAFWNSFFVADLVESEDDPLKTTLKAQTARIKAAYDDLS CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH TTYQSSKSDNDIPLN HHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA