| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is ykvO [H]
Identifier: 159184685
GI number: 159184685
Start: 1242448
End: 1243206
Strand: Direct
Name: ykvO [H]
Synonym: Atu1255
Alternate gene names: 159184685
Gene position: 1242448-1243206 (Clockwise)
Preceding gene: 15888583
Following gene: 15888588
Centisome position: 43.72
GC content: 58.23
Gene sequence:
>759_bases ATGTCTGGAATATTCAGCGGGCAAGTGGTCGTCGTCACGGGCGGATCGACCGGCATCGGCTTTTCAGTCGCCAAATTGTT TCTGGAAGGTGGGGCGTCTACGGTCTATGTGACGGGCCGCAATTCGGCCAATCTCGATGCCGCCGTCGCCAAACTTGGGA AGGGGGCAATCGGCTTCGTTTCCGACGTTGCGAAGCTCTCCGACCTGGAGCAGCTCAAGAGCCGCTTAGAAGCAGACGGG CGGAAAGTGGATGTACTGGTCGCCAACGCCGGCATCGCGGAGAATAACGATCTTGGCGAGACCCACGAGGCACTTTACGA CCGGATCTTCGATATCAACGTGAAGGGCGTATTCTACACGGTGCAGACTTTGTTGCCCGTGCTGCGCGACGGCGGTTCGA TCGTATTGACGGGGTCGATCGTCGGCAACAAGGGCATGGAAAGGCTGAGTGCTTACAATGCCTCGAAAGCGGCGGTTCGG TCATTCGCCCGCAGCTTTGCCAATGACCTGAAGGGGCGTGGCATCCGCGTCAATACGGTCAGCCCGGGTGTTACCCGCAC GCCGATCATGGAAAATGGACTGAAGATGGACGATGAAAAGATCGCCGGTTTCAAGGCCTATCTGAAGGATGCGGCACCGA TCGGCCGGATGGCCGACCCCGACGAAATTGCCGAGGCGGTGCTGTTTCTGGCGTCTTCCAAGGCCAGCTATATTACCGGT GTGGAACTTTCCGTCGATGGTGGGCTGGCGCAGATCTAA
Upstream 100 bases:
>100_bases CTCGGCTCTAGCATATGGATTGACACGCTTCAATATTTTAATAAAACCGAAATACCGAATTACGGTTATTCGGAAATTTA GATATTTTATGGAGTTTTTA
Downstream 100 bases:
>100_bases AGGCGAAGCTTCGTTACCCCGATCTACCACGCCAGATCGAGCCGCTCCAGACCATGGAAATGATAGACGTCCTTCACCTT GGGCGGCTCGGCAATCTTCA
Product: oxidoreductase
Products: 2,3-Dihydroxybenzoate; H+; Nicotinamide adenine dinucleotide - reduced [C]
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MSGIFSGQVVVVTGGSTGIGFSVAKLFLEGGASTVYVTGRNSANLDAAVAKLGKGAIGFVSDVAKLSDLEQLKSRLEADG RKVDVLVANAGIAENNDLGETHEALYDRIFDINVKGVFYTVQTLLPVLRDGGSIVLTGSIVGNKGMERLSAYNASKAAVR SFARSFANDLKGRGIRVNTVSPGVTRTPIMENGLKMDDEKIAGFKAYLKDAAPIGRMADPDEIAEAVLFLASSKASYITG VELSVDGGLAQI
Sequences:
>Translated_252_residues MSGIFSGQVVVVTGGSTGIGFSVAKLFLEGGASTVYVTGRNSANLDAAVAKLGKGAIGFVSDVAKLSDLEQLKSRLEADG RKVDVLVANAGIAENNDLGETHEALYDRIFDINVKGVFYTVQTLLPVLRDGGSIVLTGSIVGNKGMERLSAYNASKAAVR SFARSFANDLKGRGIRVNTVSPGVTRTPIMENGLKMDDEKIAGFKAYLKDAAPIGRMADPDEIAEAVLFLASSKASYITG VELSVDGGLAQI >Mature_251_residues SGIFSGQVVVVTGGSTGIGFSVAKLFLEGGASTVYVTGRNSANLDAAVAKLGKGAIGFVSDVAKLSDLEQLKSRLEADGR KVDVLVANAGIAENNDLGETHEALYDRIFDINVKGVFYTVQTLLPVLRDGGSIVLTGSIVGNKGMERLSAYNASKAAVRS FARSFANDLKGRGIRVNTVSPGVTRTPIMENGLKMDDEKIAGFKAYLKDAAPIGRMADPDEIAEAVLFLASSKASYITGV ELSVDGGLAQI
Specific function: Siderophore biosynthesis; enterobactin biosynthesis. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=35.3174603174603, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=33.4661354581673, Blast_Score=118, Evalue=5e-27, Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=36.4372469635627, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=32.6848249027237, Blast_Score=108, Evalue=3e-24, Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=37.5, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=31.7647058823529, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI59889578, Length=198, Percent_Identity=32.8282828282828, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=32.1428571428571, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI66933014, Length=194, Percent_Identity=28.8659793814433, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=30.8880308880309, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=29.3650793650794, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=29.4573643410853, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=32.4468085106383, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI142976729, Length=199, Percent_Identity=27.6381909547739, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI210032110, Length=195, Percent_Identity=27.1794871794872, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI209862901, Length=230, Percent_Identity=26.5217391304348, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI19923983, Length=230, Percent_Identity=26.5217391304348, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI223718074, Length=253, Percent_Identity=28.8537549407115, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI40807363, Length=194, Percent_Identity=26.2886597938144, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=28.8659793814433, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=37.7510040160643, Blast_Score=131, Evalue=5e-32, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=33.8709677419355, Blast_Score=120, Evalue=6e-29, Organism=Escherichia coli, GI87082100, Length=261, Percent_Identity=31.4176245210728, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=29.8387096774194, Blast_Score=110, Evalue=7e-26, Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=30.078125, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=30.7392996108949, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=30.8, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1787820, Length=234, Percent_Identity=30.3418803418803, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=30.5882352941176, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1787526, Length=254, Percent_Identity=26.7716535433071, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=30.952380952381, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=26.4, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=29.6442687747036, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=28.740157480315, Blast_Score=74, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=33.7301587301587, Blast_Score=124, Evalue=5e-29, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=35.3846153846154, Blast_Score=116, Evalue=9e-27, Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=32.8125, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=36.5384615384615, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=34.2412451361868, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=34.136546184739, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=33.4661354581673, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=34.2412451361868, Blast_Score=113, Evalue=8e-26, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=36.0153256704981, Blast_Score=110, Evalue=5e-25, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=36.2595419847328, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=36.5384615384615, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=36.0153256704981, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=31.9838056680162, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=34.0909090909091, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=32.6612903225806, Blast_Score=106, Evalue=9e-24, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=34.8659003831418, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=35.4716981132075, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=33.0769230769231, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=29.5719844357977, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=34.2205323193916, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=34.3396226415094, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=32.9501915708812, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=33.2075471698113, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=28.3524904214559, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17567345, Length=198, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI212645366, Length=249, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17538182, Length=260, Percent_Identity=27.3076923076923, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=27.8625954198473, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17536651, Length=262, Percent_Identity=28.2442748091603, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=30.5263157894737, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17564282, Length=185, Percent_Identity=30.2702702702703, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193203117, Length=243, Percent_Identity=27.9835390946502, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193203115, Length=242, Percent_Identity=27.6859504132231, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193207185, Length=145, Percent_Identity=35.1724137931034, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=29.5918367346939, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=189, Percent_Identity=32.8042328042328, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6324126, Length=261, Percent_Identity=28.3524904214559, Blast_Score=72, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=244, Percent_Identity=28.2786885245902, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322067, Length=235, Percent_Identity=28.5106382978723, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=38.1526104417671, Blast_Score=145, Evalue=3e-35, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=37.7510040160643, Blast_Score=140, Evalue=8e-34, Organism=Drosophila melanogaster, GI24644337, Length=249, Percent_Identity=40.1606425702811, Blast_Score=134, Evalue=7e-32, Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=37.3983739837398, Blast_Score=132, Evalue=1e-31, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=35.9683794466403, Blast_Score=132, Evalue=2e-31, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=35.3413654618474, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=34.0163934426229, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=31.5175097276265, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI281364892, Length=191, Percent_Identity=30.3664921465969, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI21358495, Length=241, Percent_Identity=27.3858921161826, Blast_Score=85, Evalue=3e-17, Organism=Drosophila melanogaster, GI24640492, Length=196, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24581726, Length=191, Percent_Identity=31.413612565445, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24641232, Length=241, Percent_Identity=26.9709543568465, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=29.0697674418605, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI221331216, Length=199, Percent_Identity=30.1507537688442, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24665247, Length=199, Percent_Identity=30.1507537688442, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI221331218, Length=199, Percent_Identity=29.6482412060301, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24665243, Length=199, Percent_Identity=29.6482412060301, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.3.1.28 [C]
Molecular weight: Translated: 26308; Mature: 26177
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGIFSGQVVVVTGGSTGIGFSVAKLFLEGGASTVYVTGRNSANLDAAVAKLGKGAIGFV CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCHHHH SDVAKLSDLEQLKSRLEADGRKVDVLVANAGIAENNDLGETHEALYDRIFDINVKGVFYT HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH VQTLLPVLRDGGSIVLTGSIVGNKGMERLSAYNASKAAVRSFARSFANDLKGRGIRVNTV HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEC SPGVTRTPIMENGLKMDDEKIAGFKAYLKDAAPIGRMADPDEIAEAVLFLASSKASYITG CCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE VELSVDGGLAQI EEEEECCCCCCC >Mature Secondary Structure SGIFSGQVVVVTGGSTGIGFSVAKLFLEGGASTVYVTGRNSANLDAAVAKLGKGAIGFV CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCHHHH SDVAKLSDLEQLKSRLEADGRKVDVLVANAGIAENNDLGETHEALYDRIFDINVKGVFYT HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHH VQTLLPVLRDGGSIVLTGSIVGNKGMERLSAYNASKAAVRSFARSFANDLKGRGIRVNTV HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEC SPGVTRTPIMENGLKMDDEKIAGFKAYLKDAAPIGRMADPDEIAEAVLFLASSKASYITG CCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE VELSVDGGLAQI EEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 5550 [C]
Specific activity: 66
Km value (mM): 0.26 {methyl-2,3-dehydro-3-hydroxybenzoate}} 0.2 {3-oxocyclohexane-1-carboxylic} 0.3 {2,3-dihydro-2,3-dihydroxybenzoate}} [C]
Substrates: 2,3-Dihydro-2,3-dihydroxybenzoate; Nicotinamide adenine dinucleotide [C]
Specific reaction: 2,3-Dihydro-2,3-dihydroxybenzoate + Nicotinamide adenine dinucleotide <==> 2,3-Dihydroxybenzoate + H+ + Nicotinamide adenine dinucleotide - reduced [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]