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The map label for this gene is nusB

Identifier: 159184647

GI number: 159184647

Start: 1165302

End: 1165799

Strand: Direct

Name: nusB

Synonym: Atu1172

Alternate gene names: 159184647

Gene position: 1165302-1165799 (Clockwise)

Preceding gene: 15888508

Following gene: 15888510

Centisome position: 41.01

GC content: 62.25

Gene sequence:

>498_bases
ATGTCGGATGTTGAAAACGGCGGCGAACCGCGCCAGCCTTCGGTAAAGCCCGCCAACCAGCGCGGTGCGGCCCGTCTAGC
GGCCGTGCAGGCGCTGTACCAGATGGATGTCGGTGGAACCGGCGTGATGGAAGTCGTCGCCGAATATGAGGCGCACCGTC
TTGGCCAGGAAGTCGATGGCGATACCTATCTGAAGGCTGATCCTTCGTGGTTCCGTTCGATCGTCTCTGGCGTCGTGCGC
GATCAGACGAAGATCGACCCGCTGGTACGCTCCGCCCTCCTGGAAGACTGGCCGCTCTCGCGTCTCGATGCCACCGTGCG
CGCCATCCTGCGTGCCGGCACCTTCGAGATTCTCGAGCGCAAGGACGTGCCGGTTGCCGTCATCGTCACCGAATATGTCG
AAATCGCTCGCGCTTTCTTCGAACATGACGAGCCCAAGCTGGTGAATGCGGTGCTTGACCGCATTGCCAAGCAGGTGCGC
GGCGAGGCAAAACGCTGA

Upstream 100 bases:

>100_bases
TGGGCGCGCGTGCGCCGCTCCGACAAGGACAAGGGCGGTTTTGCCGCCCGCGCGGCGCTCACCATGATCGAGCTGAAAAA
GAAACTGGGTGGCTGAACGC

Downstream 100 bases:

>100_bases
AGTAAAACAGGTGAGGAAGAGATGAGCGTGGTTTCCGTCCCAGGACTAGAGGTTCAACTGGACGAGGCGAAGCGCAACGT
CTTTCTCCTCACCATGGCGC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MSDVENGGEPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDTYLKADPSWFRSIVSGVVR
DQTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPVAVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVR
GEAKR

Sequences:

>Translated_165_residues
MSDVENGGEPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDTYLKADPSWFRSIVSGVVR
DQTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPVAVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVR
GEAKR
>Mature_164_residues
SDVENGGEPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDTYLKADPSWFRSIVSGVVRD
QTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPVAVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRG
EAKR

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=141, Percent_Identity=31.2056737588652, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_AGRT5 (Q8UG69)

Other databases:

- EMBL:   AE007869
- PIR:   AB2721
- PIR:   F97502
- RefSeq:   NP_354190.2
- ProteinModelPortal:   Q8UG69
- SMR:   Q8UG69
- STRING:   Q8UG69
- GeneID:   1133210
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1172
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   TEYVEIA
- PhylomeDB:   Q8UG69
- ProtClustDB:   PRK00202
- BioCyc:   ATUM176299-1:ATU1172-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 18284; Mature: 18153

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVENGGEPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
DTYLKADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILER
CCEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
KDVPVAVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGEAKR
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SDVENGGEPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
DTYLKADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILER
CCEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
KDVPVAVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGEAKR
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194