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The map label for this gene is oxyR [H]

Identifier: 159184509

GI number: 159184509

Start: 870752

End: 871639

Strand: Reverse

Name: oxyR [H]

Synonym: Atu0873

Alternate gene names: 159184509

Gene position: 871639-870752 (Counterclockwise)

Preceding gene: 15888216

Following gene: 15888211

Centisome position: 30.67

GC content: 65.43

Gene sequence:

>888_bases
ATGATCGACCTCGATCTCAGGCAGATGCGCAGTTTCATGGATGTGGCCGATCTCGGCAGTTTTTCCGCCGCCGCCGACAA
GGCCGGGCTGACGCAGCCGGCCGTCAGCCTGCATATAAGGCTTCTGGAAAAGCAGCTGGGTGTGCGGCTGATCGAGAGGG
TCGGCAGGCGCGCGCAGCCAACGGCGGCAGGGAGGGATTTTCTCATCCACGCAAGGCGCATATCCGAAGAGGTGGCGCAT
GCGATCGAAACGGTTGCGCCGCACCGCAGCGGGGCGACGGGAAGCCTGCGCATTGGCACCGGCGCCACCGCCTGTATCTA
TCTGCTGCCGCCGGTGCTTGGCCGCATCCGGCAGGCGATGCCGGGCATCGACATCGTCGTGCAAACAGGCAATACCCACG
ATATATTGCGGCTTCTGGAGGCCAATACGATCGACGCGGCGGTGGTGGCCCTGCCCGCCAGCGGCCGCAGCCTCGATATC
CGCGACATCCATCTCGACGAACTCGTCGCGGTGTTTCCGCGCGGCGCCGTGCCGGCCAGAACCACGCTGACTGCCGAAAC
GCTGTCGACGCGATCTCTGCTGCTTTACGAGGGCGGCAATACGCGCAAGCTGGTGGACCAATGGTTTTCGGCCAGCGGTC
GCACCGTGCAGCCCGCCATGGAACTGGGCAGCGTCGAGGCCATCAAGAAACTGGCGGGCGCGGGTCTTGGCCTTGCCGTC
GTGCCGCGCATGGCCGTGGAACATGAAGGAGCCGCATCCGGGCTTGAATGGCGCTCGCTCGAACCGCCGCTCGAACGGCG
GATTGCGCTGGCGATGAGGCGTGACAAGCACATGACTGCGCCGCTCAGGGCGCTGGCCGGTGCGTTACCGGATGTGCGGA
AAGGGTGA

Upstream 100 bases:

>100_bases
TCATTCTCTTGTCCTGCGGATCATTCACGCCCTCATTGTGCATTGCGGCGCAGCCAAAATAAAGATTATCTGTCTTATAC
AAACGATAAGGTTTTCTTTG

Downstream 100 bases:

>100_bases
AGTGGAGTGCAGATTTTAGATAAAGGCCAGGCCATCGAAACTGATGGCGAATGATGCGCATTTTCTCGACGGCATCCTTG
GGCTTGTCCCAAGGATCTAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MIDLDLRQMRSFMDVADLGSFSAAADKAGLTQPAVSLHIRLLEKQLGVRLIERVGRRAQPTAAGRDFLIHARRISEEVAH
AIETVAPHRSGATGSLRIGTGATACIYLLPPVLGRIRQAMPGIDIVVQTGNTHDILRLLEANTIDAAVVALPASGRSLDI
RDIHLDELVAVFPRGAVPARTTLTAETLSTRSLLLYEGGNTRKLVDQWFSASGRTVQPAMELGSVEAIKKLAGAGLGLAV
VPRMAVEHEGAASGLEWRSLEPPLERRIALAMRRDKHMTAPLRALAGALPDVRKG

Sequences:

>Translated_295_residues
MIDLDLRQMRSFMDVADLGSFSAAADKAGLTQPAVSLHIRLLEKQLGVRLIERVGRRAQPTAAGRDFLIHARRISEEVAH
AIETVAPHRSGATGSLRIGTGATACIYLLPPVLGRIRQAMPGIDIVVQTGNTHDILRLLEANTIDAAVVALPASGRSLDI
RDIHLDELVAVFPRGAVPARTTLTAETLSTRSLLLYEGGNTRKLVDQWFSASGRTVQPAMELGSVEAIKKLAGAGLGLAV
VPRMAVEHEGAASGLEWRSLEPPLERRIALAMRRDKHMTAPLRALAGALPDVRKG
>Mature_295_residues
MIDLDLRQMRSFMDVADLGSFSAAADKAGLTQPAVSLHIRLLEKQLGVRLIERVGRRAQPTAAGRDFLIHARRISEEVAH
AIETVAPHRSGATGSLRIGTGATACIYLLPPVLGRIRQAMPGIDIVVQTGNTHDILRLLEANTIDAAVVALPASGRSLDI
RDIHLDELVAVFPRGAVPARTTLTAETLSTRSLLLYEGGNTRKLVDQWFSASGRTVQPAMELGSVEAIKKLAGAGLGLAV
VPRMAVEHEGAASGLEWRSLEPPLERRIALAMRRDKHMTAPLRALAGALPDVRKG

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=285, Percent_Identity=31.2280701754386, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082132, Length=250, Percent_Identity=29.2, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1790399, Length=276, Percent_Identity=27.536231884058, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693105, Length=273, Percent_Identity=23.0769230769231, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI157672245, Length=274, Percent_Identity=27.7372262773723, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787806, Length=264, Percent_Identity=26.1363636363636, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787879, Length=246, Percent_Identity=28.4552845528455, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=23.5494880546075, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787530, Length=250, Percent_Identity=27.6, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790208, Length=250, Percent_Identity=24, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790262, Length=253, Percent_Identity=24.901185770751, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787601, Length=179, Percent_Identity=27.3743016759777, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=262, Percent_Identity=26.7175572519084, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788887, Length=247, Percent_Identity=28.3400809716599, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081904, Length=143, Percent_Identity=32.1678321678322, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367136, Length=144, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788626, Length=162, Percent_Identity=31.4814814814815, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789639, Length=125, Percent_Identity=30.4, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786401, Length=150, Percent_Identity=30, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31660; Mature: 31660

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50931 HTH_LYSR ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLDLRQMRSFMDVADLGSFSAAADKAGLTQPAVSLHIRLLEKQLGVRLIERVGRRAQP
CCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TAAGRDFLIHARRISEEVAHAIETVAPHRSGATGSLRIGTGATACIYLLPPVLGRIRQAM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHC
PGIDIVVQTGNTHDILRLLEANTIDAAVVALPASGRSLDIRDIHLDELVAVFPRGAVPAR
CCCEEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHCCCCCCCC
TTLTAETLSTRSLLLYEGGNTRKLVDQWFSASGRTVQPAMELGSVEAIKKLAGAGLGLAV
CEEHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEECHHHHHCHHHHHHHHHCCCCCHHH
VPRMAVEHEGAASGLEWRSLEPPLERRIALAMRRDKHMTAPLRALAGALPDVRKG
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIDLDLRQMRSFMDVADLGSFSAAADKAGLTQPAVSLHIRLLEKQLGVRLIERVGRRAQP
CCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TAAGRDFLIHARRISEEVAHAIETVAPHRSGATGSLRIGTGATACIYLLPPVLGRIRQAM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHC
PGIDIVVQTGNTHDILRLLEANTIDAAVVALPASGRSLDIRDIHLDELVAVFPRGAVPAR
CCCEEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHCCCCCCCC
TTLTAETLSTRSLLLYEGGNTRKLVDQWFSASGRTVQPAMELGSVEAIKKLAGAGLGLAV
CEEHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEECHHHHHCHHHHHHHHHCCCCCHHH
VPRMAVEHEGAASGLEWRSLEPPLERRIALAMRRDKHMTAPLRALAGALPDVRKG
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]