| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is ppdK [H]
Identifier: 159184470
GI number: 159184470
Start: 801471
End: 804197
Strand: Direct
Name: ppdK [H]
Synonym: Atu0803
Alternate gene names: 159184470
Gene position: 801471-804197 (Clockwise)
Preceding gene: 159184469
Following gene: 159184472
Centisome position: 28.21
GC content: 62.08
Gene sequence:
>2727_bases ATGAAAAAGTGGGTTTATACCTTCGGCAATGGTGCTGCCGAAGGCGGGGCAGGTGACGTTGCTATATTGGGCGGCAAGGG CGCGAACCTTGCCGAAATGGCAAGTCTCGGCCTACCCGTTCCCCCCGGCCTCACGATTATAGCCGATGCCTGCGCGCTTT ATCACAAGAATGGCCGCGATCTTCCCGAAGAGCTGAAGCTGCAGGTCATGGCCGGGCTGCACGGCATGGAGATTGTCACC GGCAAGACCTTCGGCGGCAGCCATTCGCCACTGCTGATCTCCGTCCGCTCCGGCGCCCGCGCCTCCATGCCCGGCATGAT GGATACCGTCCTCAACCTCGGTCTCAATGACCGCACGGTCGAGGCGCTGGGCCATGATGCGGGTGATGCCCGTTTTGCCT GGGACAGCTACCGCCGTTTCATCCAGATGTATGGCGATGTCGTCATGGGCCTCGATCATGAAATGTTCGAGGAAATTCTC GAAGATGAGAAAGGCCGCCTCGGCCATGAATACGATACCGACATGTCGGCGGTCGAATGGCAGCACGTCGTTTCGCTTTA CAAGAAGCTGATCGAGGACGAGCTCGGCGAAGCCTTCCCGCAGGATTGTCATGTCCAGCTCTGGGGCGCGATCGGCGCCG TTTTCGCCAGCTGGACCAATCATCGCGCCGTGACCTACCGGCATCTGCACAATATTCCGGGTGACTGGGGTACAGCCGTC AACGTGCAGGCCATGGTCTTCGGCAATCTCGGTTCGTCCTCGGCAACCGGCGTCGCCTTCACCCGCAATCCCTCCACCGG TGAGGCGGAGCTTTACGGCGAATTCCTCGTCAATGCGCAAGGGGAGGACGTGGTTGCGGGCATCCGCACGCCGCAATCCA TCACGGAAGCCGCGCGGCTGGTATCGGGTTCCGACAAGCCTTCCATGGAAAAGCTGATGCCGGAGGCGTTTTCCGAATTT CTTGCGATCTGCAAGCGGCTGGAAACGCATTACCGTGACATGCAGGATCTGGAATTCACCATCGAGCGCGGCAAGCTCTG GATGCTGCAGACCCGTTCCGGCAAGCGCACCACCCGCGCCGCCATGAAAATCGCCGTCGATATGGTGGAAGCGGGGCTGA TTTCGCAGGAGGAGGCCGTCTGCCGCATCGAGCCGTCGTCGCTCGACCAGCTGCTGCACCCGACCATCGATCCCGGCATT TCCCGCCCTATCATCGGTTCCGGCCTGCCGGCCTCGCCTGGTGCGGCGACCGGTGAGATCGTCTTCACATCGGAAGAGGC GGTCGCCGCCGAAGCCGAGGGGCGTCGTGTCATTCTGGTGCGCATCGAAACCAGCCCGGAAGATATTCACGGCATGCATG CCGCCGAAGGCATTCTGACGACGCGTGGCGGCATGACCAGCCACGCCGCCGTGGTGGCACGCGGCATGGGCATCCCTTGC GTCACCGGCGCCGGCTCCATGCGCGTGGACATGCGTAACAAGGTGCTGATCGGCGTCGGCTGTATGCTGAAGCGCGGCGA TGTCATCACCATCGATGGCTCTTCCGGCCGGGTGCTGAAGGGCGAAGTACCGATGACGCAGCCGGAACTGTCAGGCGATT TCGGCAAGCTGATGCAATGGGCGGACAATCTGCGCCGAATGACCGTGCGCACCAATGCAGATACGCCGGCCGATGCCCGC GCCGCCCGTGCCTTCGGCGCTGAGGGTATTGGCCTCTGCCGCACCGAACACATGTTCTTTGAAGGCGACCGCATCCATGT GATGCGCGAGATGATCCTTGCCGAAAGCGAAAAGGGCAGGCGGGCAGCGCTCGATCAGCTTCTGCCGATGCAGCGTTCGG ATTTTACCGAGCTGTTCCAGATCATGCACGGCCTGCCGGTCACGATCCGCCTGCTCGATCCGCCGCTGCACGAATTCCTG CCGAAGAGCGATGGTGAGATCGTCGAGGTCGCAGCCGCCATGGGCATGCCGCAGACGGTGTTCCGCCAAAGGCTGGATGC GCTGCACGAATTTAACCCCATGCTCGGCCACCGCGGCTGCCGGCTGGCCATTTCCTATCCCGAAATCGCCGAAATGCAGG CACGCGCCATTTTTGAAGCGGCTGTGGCTGCGGCGCGCATCACCGGTGCGCCTGTTGTGCCTGAGATCATGGTGCCGCTG GTCGGCCTCCGCTCCGAACTGGATTACGTCAAGGCTGTCATCGACACGGTGGCCGCGGAGGTGGCTGAAGAGACCGGCAT GAGCATCGAATATCTGACCGGCACCATGATCGAGCTGCCGCGTGCGGCCCTGCGTGCCCATGTCATTGCAGAAGCGGCGG AATTCTTCTCCTTCGGCACCAACGACCTGACGCAGACGACTTTCGGCATTTCGCGCGACGATGCGGCGCGTTTCATCAAT ACCTATCAGCGCAAGGGCATCATCGAACGCGATCCGTTCATCTCGCTCGATTTCGACGGTGTGGGAGAACTGATCCGCAT TGCCGCCGAACGCGGCCGCCAGACGCGGCCGGAACTGAAGCTCGGTATCTGCGGTGAACATGGCGGCGATCCGGCCTCGA TCCATTTCTGCGAGGATGCGGATCTAGACTACGTGTCGTGCTCACCCTTCCGCGTGCCCATCGCCCGGCTTGCGGCGGCG CAGGCGACGCTCGCTGCAAAGGCAAAGCAGGGGGAAACACCAAGCAACGTCGCCTTCATTCCCGTCAGGGGTTCTGTCGG ACGATGA
Upstream 100 bases:
>100_bases GCTGCACTGCGATGTAAACTGCACGTTGCGGCGTTCCCAACATGCTGGCAATGCTGTAGATGATAGAAAAATGACAACGC TTCTGGGTGGAGAGCGTGGA
Downstream 100 bases:
>100_bases TCTGACGCTCGACAACGACCGGCCGGTAGAACATGTCGCGGTTCATCTGCGCCTGCCAGGCGCGGTTGTCGGCGCGGCGG TCCATCTCCAGATCGAGAAG
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 908; Mature: 908
Protein sequence:
>908_residues MKKWVYTFGNGAAEGGAGDVAILGGKGANLAEMASLGLPVPPGLTIIADACALYHKNGRDLPEELKLQVMAGLHGMEIVT GKTFGGSHSPLLISVRSGARASMPGMMDTVLNLGLNDRTVEALGHDAGDARFAWDSYRRFIQMYGDVVMGLDHEMFEEIL EDEKGRLGHEYDTDMSAVEWQHVVSLYKKLIEDELGEAFPQDCHVQLWGAIGAVFASWTNHRAVTYRHLHNIPGDWGTAV NVQAMVFGNLGSSSATGVAFTRNPSTGEAELYGEFLVNAQGEDVVAGIRTPQSITEAARLVSGSDKPSMEKLMPEAFSEF LAICKRLETHYRDMQDLEFTIERGKLWMLQTRSGKRTTRAAMKIAVDMVEAGLISQEEAVCRIEPSSLDQLLHPTIDPGI SRPIIGSGLPASPGAATGEIVFTSEEAVAAEAEGRRVILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPC VTGAGSMRVDMRNKVLIGVGCMLKRGDVITIDGSSGRVLKGEVPMTQPELSGDFGKLMQWADNLRRMTVRTNADTPADAR AARAFGAEGIGLCRTEHMFFEGDRIHVMREMILAESEKGRRAALDQLLPMQRSDFTELFQIMHGLPVTIRLLDPPLHEFL PKSDGEIVEVAAAMGMPQTVFRQRLDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVAAARITGAPVVPEIMVPL VGLRSELDYVKAVIDTVAAEVAEETGMSIEYLTGTMIELPRAALRAHVIAEAAEFFSFGTNDLTQTTFGISRDDAARFIN TYQRKGIIERDPFISLDFDGVGELIRIAAERGRQTRPELKLGICGEHGGDPASIHFCEDADLDYVSCSPFRVPIARLAAA QATLAAKAKQGETPSNVAFIPVRGSVGR
Sequences:
>Translated_908_residues MKKWVYTFGNGAAEGGAGDVAILGGKGANLAEMASLGLPVPPGLTIIADACALYHKNGRDLPEELKLQVMAGLHGMEIVT GKTFGGSHSPLLISVRSGARASMPGMMDTVLNLGLNDRTVEALGHDAGDARFAWDSYRRFIQMYGDVVMGLDHEMFEEIL EDEKGRLGHEYDTDMSAVEWQHVVSLYKKLIEDELGEAFPQDCHVQLWGAIGAVFASWTNHRAVTYRHLHNIPGDWGTAV NVQAMVFGNLGSSSATGVAFTRNPSTGEAELYGEFLVNAQGEDVVAGIRTPQSITEAARLVSGSDKPSMEKLMPEAFSEF LAICKRLETHYRDMQDLEFTIERGKLWMLQTRSGKRTTRAAMKIAVDMVEAGLISQEEAVCRIEPSSLDQLLHPTIDPGI SRPIIGSGLPASPGAATGEIVFTSEEAVAAEAEGRRVILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPC VTGAGSMRVDMRNKVLIGVGCMLKRGDVITIDGSSGRVLKGEVPMTQPELSGDFGKLMQWADNLRRMTVRTNADTPADAR AARAFGAEGIGLCRTEHMFFEGDRIHVMREMILAESEKGRRAALDQLLPMQRSDFTELFQIMHGLPVTIRLLDPPLHEFL PKSDGEIVEVAAAMGMPQTVFRQRLDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVAAARITGAPVVPEIMVPL VGLRSELDYVKAVIDTVAAEVAEETGMSIEYLTGTMIELPRAALRAHVIAEAAEFFSFGTNDLTQTTFGISRDDAARFIN TYQRKGIIERDPFISLDFDGVGELIRIAAERGRQTRPELKLGICGEHGGDPASIHFCEDADLDYVSCSPFRVPIARLAAA QATLAAKAKQGETPSNVAFIPVRGSVGR >Mature_908_residues MKKWVYTFGNGAAEGGAGDVAILGGKGANLAEMASLGLPVPPGLTIIADACALYHKNGRDLPEELKLQVMAGLHGMEIVT GKTFGGSHSPLLISVRSGARASMPGMMDTVLNLGLNDRTVEALGHDAGDARFAWDSYRRFIQMYGDVVMGLDHEMFEEIL EDEKGRLGHEYDTDMSAVEWQHVVSLYKKLIEDELGEAFPQDCHVQLWGAIGAVFASWTNHRAVTYRHLHNIPGDWGTAV NVQAMVFGNLGSSSATGVAFTRNPSTGEAELYGEFLVNAQGEDVVAGIRTPQSITEAARLVSGSDKPSMEKLMPEAFSEF LAICKRLETHYRDMQDLEFTIERGKLWMLQTRSGKRTTRAAMKIAVDMVEAGLISQEEAVCRIEPSSLDQLLHPTIDPGI SRPIIGSGLPASPGAATGEIVFTSEEAVAAEAEGRRVILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPC VTGAGSMRVDMRNKVLIGVGCMLKRGDVITIDGSSGRVLKGEVPMTQPELSGDFGKLMQWADNLRRMTVRTNADTPADAR AARAFGAEGIGLCRTEHMFFEGDRIHVMREMILAESEKGRRAALDQLLPMQRSDFTELFQIMHGLPVTIRLLDPPLHEFL PKSDGEIVEVAAAMGMPQTVFRQRLDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVAAARITGAPVVPEIMVPL VGLRSELDYVKAVIDTVAAEVAEETGMSIEYLTGTMIELPRAALRAHVIAEAAEFFSFGTNDLTQTTFGISRDDAARFIN TYQRKGIIERDPFISLDFDGVGELIRIAAERGRQTRPELKLGICGEHGGDPASIHFCEDADLDYVSCSPFRVPIARLAAA QATLAAKAKQGETPSNVAFIPVRGSVGR
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=456, Percent_Identity=24.780701754386, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI1789193, Length=404, Percent_Identity=25.990099009901, Blast_Score=99, Evalue=9e-22, Organism=Escherichia coli, GI1787994, Length=653, Percent_Identity=25.5742725880551, Blast_Score=90, Evalue=7e-19, Organism=Escherichia coli, GI1788726, Length=428, Percent_Identity=23.5981308411215, Blast_Score=84, Evalue=3e-17,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 98408; Mature: 98408
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKWVYTFGNGAAEGGAGDVAILGGKGANLAEMASLGLPVPPGLTIIADACALYHKNGRD CCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC LPEELKLQVMAGLHGMEIVTGKTFGGSHSPLLISVRSGARASMPGMMDTVLNLGLNDRTV CHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHH EALGHDAGDARFAWDSYRRFIQMYGDVVMGLDHEMFEEILEDEKGRLGHEYDTDMSAVEW HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH QHVVSLYKKLIEDELGEAFPQDCHVQLWGAIGAVFASWTNHRAVTYRHLHNIPGDWGTAV HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCEE NVQAMVFGNLGSSSATGVAFTRNPSTGEAELYGEFLVNAQGEDVVAGIRTPQSITEAARL EEEEEEEECCCCCCCCCEEEECCCCCCCHHEEEHHHCCCCCCCEEEECCCCHHHHHHHHH VSGSDKPSMEKLMPEAFSEFLAICKRLETHYRDMQDLEFTIERGKLWMLQTRSGKRTTRA HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCEEEEEECCCCHHHHH AMKIAVDMVEAGLISQEEAVCRIEPSSLDQLLHPTIDPGISRPIIGSGLPASPGAATGEI HHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE VFTSEEAVAAEAEGRRVILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPC EEECCHHHHHCCCCCEEEEEEEECCCHHHCCHHHHCCEEEECCCCCHHHHHHHHCCCCCE VTGAGSMRVDMRNKVLIGVGCMLKRGDVITIDGSSGRVLKGEVPMTQPELSGDFGKLMQW EECCCCEEEECCCCEEEEECEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHH ADNLRRMTVRTNADTPADARAARAFGAEGIGLCRTEHMFFEGDRIHVMREMILAESEKGR HHHHHEEEEECCCCCCCHHHHHHHCCCCCCCEEEECCEEECCCHHHHHHHHHHHCCCCCH RAALDQLLPMQRSDFTELFQIMHGLPVTIRLLDPPLHEFLPKSDGEIVEVAAAMGMPQTV HHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCHHHHHHHHCCCHHH FRQRLDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVAAARITGAPVVPEIMVPL HHHHHHHHHHCCHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH VGLRSELDYVKAVIDTVAAEVAEETGMSIEYLTGTMIELPRAALRAHVIAEAAEFFSFGT HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC NDLTQTTFGISRDDAARFINTYQRKGIIERDPFISLDFDGVGELIRIAAERGRQTRPELK CCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEE LGICGEHGGDPASIHFCEDADLDYVSCSPFRVPIARLAAAQATLAAKAKQGETPSNVAFI EEECCCCCCCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE PVRGSVGR EECCCCCC >Mature Secondary Structure MKKWVYTFGNGAAEGGAGDVAILGGKGANLAEMASLGLPVPPGLTIIADACALYHKNGRD CCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC LPEELKLQVMAGLHGMEIVTGKTFGGSHSPLLISVRSGARASMPGMMDTVLNLGLNDRTV CHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHH EALGHDAGDARFAWDSYRRFIQMYGDVVMGLDHEMFEEILEDEKGRLGHEYDTDMSAVEW HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH QHVVSLYKKLIEDELGEAFPQDCHVQLWGAIGAVFASWTNHRAVTYRHLHNIPGDWGTAV HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCEE NVQAMVFGNLGSSSATGVAFTRNPSTGEAELYGEFLVNAQGEDVVAGIRTPQSITEAARL EEEEEEEECCCCCCCCCEEEECCCCCCCHHEEEHHHCCCCCCCEEEECCCCHHHHHHHHH VSGSDKPSMEKLMPEAFSEFLAICKRLETHYRDMQDLEFTIERGKLWMLQTRSGKRTTRA HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCEEEEEECCCCHHHHH AMKIAVDMVEAGLISQEEAVCRIEPSSLDQLLHPTIDPGISRPIIGSGLPASPGAATGEI HHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE VFTSEEAVAAEAEGRRVILVRIETSPEDIHGMHAAEGILTTRGGMTSHAAVVARGMGIPC EEECCHHHHHCCCCCEEEEEEEECCCHHHCCHHHHCCEEEECCCCCHHHHHHHHCCCCCE VTGAGSMRVDMRNKVLIGVGCMLKRGDVITIDGSSGRVLKGEVPMTQPELSGDFGKLMQW EECCCCEEEECCCCEEEEECEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHH ADNLRRMTVRTNADTPADARAARAFGAEGIGLCRTEHMFFEGDRIHVMREMILAESEKGR HHHHHEEEEECCCCCCCHHHHHHHCCCCCCCEEEECCEEECCCHHHHHHHHHHHCCCCCH RAALDQLLPMQRSDFTELFQIMHGLPVTIRLLDPPLHEFLPKSDGEIVEVAAAMGMPQTV HHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCHHHHHHHHCCCHHH FRQRLDALHEFNPMLGHRGCRLAISYPEIAEMQARAIFEAAVAAARITGAPVVPEIMVPL HHHHHHHHHHCCHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH VGLRSELDYVKAVIDTVAAEVAEETGMSIEYLTGTMIELPRAALRAHVIAEAAEFFSFGT HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC NDLTQTTFGISRDDAARFINTYQRKGIIERDPFISLDFDGVGELIRIAAERGRQTRPELK CCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEE LGICGEHGGDPASIHFCEDADLDYVSCSPFRVPIARLAAAQATLAAKAKQGETPSNVAFI EEECCCCCCCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE PVRGSVGR EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]