Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is pgl [H]
Identifier: 159184382
GI number: 159184382
Start: 585140
End: 585838
Strand: Reverse
Name: pgl [H]
Synonym: Atu0599
Alternate gene names: 159184382
Gene position: 585838-585140 (Counterclockwise)
Preceding gene: 159184383
Following gene: 15887943
Centisome position: 20.62
GC content: 61.37
Gene sequence:
>699_bases ATGAGCGAAACGATCCACGTCTTCGACACCGCCGCCGCGCTGGCCACCGCACTTGCGGCGGAGGTTGCCAAACGCCTTGA TGCGGCGACCAAGGAACGGGGGACCGCCAGCATTGCGGTCTCAGGCGGCTCGACACCGAAGCTGTTTTTTCAGGCGCTTT CCAGACACGATCTCGACTGGCCCAATATCAGCGTGACGCTGGTGGACGAGCGTTTCGTGCCGCCGGAAAGCGACCGTTCG AACCATCGCCTCGTCGCGGACAATCTTTTGCAGGACAAGGCGAAGGCGGCCTATTTCGTGCCGCTGTTCCAGCCGGCTGC CTCGCCGGAGGATGCGGCCACACTGGCGACCGTCAAGACCGAAGCGATCTGCGATCCTTTCGACGTCGTCATTCTCGGCA TGGGAACGGATGGCCACACCGCATCGTTCTTCCCAGGTGGCGACAATCTCTACGAAGCGCTCGATCTCGATGAGCCGCGT GGCGTGTTGACCATGGCAGCGGAGAATGCGGGGGAAGAGCGGTTGACCTTCAACTTCTCCAGCCTGCACGATGCCGATTT TCTGGTGCTGCATATCGAAGGTGCGGCCAAGAAGGCGACGCTGGAGAAGGCACAATCGGGCGAGGATGAGGACGAAATGC CTGTTCGCGCCGTGCTGAACCGGGCCGAAACGCCCGTGGATATATACTGGGCGCCATAA
Upstream 100 bases:
>100_bases GTACAGGGTTACACTGCCGGCACCTGGGGCCCGAGCGGTTCGATCGCACTGATCGAGCGCGACGGCCGCACCTGGCACGA TGCCGACTGAGGGCCGGGCG
Downstream 100 bases:
>100_bases GCTAACGCGGTTGCCGCCTCTGCGGCCCGCGACAAGCGCCCGAAGACATGAAGACTGAAACACGACAACCGGCCGCTCAC CTCCCGGAACGCTGGTTGCC
Product: 6-phosphogluconolactonase
Products: NA
Alternate protein names: 6PGL [H]
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MSETIHVFDTAAALATALAAEVAKRLDAATKERGTASIAVSGGSTPKLFFQALSRHDLDWPNISVTLVDERFVPPESDRS NHRLVADNLLQDKAKAAYFVPLFQPAASPEDAATLATVKTEAICDPFDVVILGMGTDGHTASFFPGGDNLYEALDLDEPR GVLTMAAENAGEERLTFNFSSLHDADFLVLHIEGAAKKATLEKAQSGEDEDEMPVRAVLNRAETPVDIYWAP
Sequences:
>Translated_232_residues MSETIHVFDTAAALATALAAEVAKRLDAATKERGTASIAVSGGSTPKLFFQALSRHDLDWPNISVTLVDERFVPPESDRS NHRLVADNLLQDKAKAAYFVPLFQPAASPEDAATLATVKTEAICDPFDVVILGMGTDGHTASFFPGGDNLYEALDLDEPR GVLTMAAENAGEERLTFNFSSLHDADFLVLHIEGAAKKATLEKAQSGEDEDEMPVRAVLNRAETPVDIYWAP >Mature_231_residues SETIHVFDTAAALATALAAEVAKRLDAATKERGTASIAVSGGSTPKLFFQALSRHDLDWPNISVTLVDERFVPPESDRSN HRLVADNLLQDKAKAAYFVPLFQPAASPEDAATLATVKTEAICDPFDVVILGMGTDGHTASFFPGGDNLYEALDLDEPRG VLTMAAENAGEERLTFNFSSLHDADFLVLHIEGAAKKATLEKAQSGEDEDEMPVRAVLNRAETPVDIYWAP
Specific function: Hydrolysis of 6-phosphogluconolactone to 6- phosphogluconate [H]
COG id: COG0363
COG function: function code G; 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily [H]
Homologues:
Organism=Homo sapiens, GI52145310, Length=218, Percent_Identity=28.4403669724771, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI115533060, Length=212, Percent_Identity=31.1320754716981, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115533058, Length=212, Percent_Identity=31.1320754716981, Blast_Score=75, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6321957, Length=227, Percent_Identity=26.431718061674, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6321687, Length=180, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005900 [H]
Pfam domain/function: NA
EC number: =3.1.1.31 [H]
Molecular weight: Translated: 24986; Mature: 24855
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETIHVFDTAAALATALAAEVAKRLDAATKERGTASIAVSGGSTPKLFFQALSRHDLDW CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC PNISVTLVDERFVPPESDRSNHRLVADNLLQDKAKAAYFVPLFQPAASPEDAATLATVKT CCEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHCCEEEEEEECCCCCCCCHHEEEEEEH EAICDPFDVVILGMGTDGHTASFFPGGDNLYEALDLDEPRGVLTMAAENAGEERLTFNFS HHCCCCCEEEEEEECCCCCEEEECCCCCCHHHHCCCCCCCCEEEEEECCCCCCEEEEEEC SLHDADFLVLHIEGAAKKATLEKAQSGEDEDEMPVRAVLNRAETPVDIYWAP CCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECC >Mature Secondary Structure SETIHVFDTAAALATALAAEVAKRLDAATKERGTASIAVSGGSTPKLFFQALSRHDLDW CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC PNISVTLVDERFVPPESDRSNHRLVADNLLQDKAKAAYFVPLFQPAASPEDAATLATVKT CCEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHCCEEEEEEECCCCCCCCHHEEEEEEH EAICDPFDVVILGMGTDGHTASFFPGGDNLYEALDLDEPRGVLTMAAENAGEERLTFNFS HHCCCCCEEEEEEECCCCCEEEECCCCCCHHHHCCCCCCCCEEEEEECCCCCCEEEEEEC SLHDADFLVLHIEGAAKKATLEKAQSGEDEDEMPVRAVLNRAETPVDIYWAP CCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10400573; 11481430 [H]