Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184381
Identifier: 159184381
GI number: 159184381
Start: 581615
End: 582976
Strand: Reverse
Name: 159184381
Synonym: Atu0597
Alternate gene names: NA
Gene position: 582976-581615 (Counterclockwise)
Preceding gene: 15887943
Following gene: 159184378
Centisome position: 20.52
GC content: 60.35
Gene sequence:
>1362_bases ATGATTTTCTCGAGCAAACGCCGCGATGTGCTGAAGCTTATGGCAGGCACCGCCATGCTGCCGCTGTTGCTGACAGCCAC GCCTGTTATGGCGCAGGACGTGGCGCTGCGTGCGATCATCATCTCCGACCTGCATTCGGCCTATGAACGCATCGGCCAGC TCCTCGCGGCAATAGAAACCCGCATCGCCACCGACAGGGTGCCCCATATCATTCTCCTGAACGGGGACCTGTTCGAGATC GGCAACGCAGTGGCCGCCCGTTCGGCCGGCGAAATCGAGTGGACATTCCTCACGGCGCTCGCCAGGCTCGCGCCCACAGT CATCAATATCGGCAATCATGAGCCTGATATCGATAATGACCTCGCCAATTTTGTTACCCGTGCCCAGGCGCTTGGCATCA CCGTGCTTTCCAACATCATCGACAAGCGCAGCGGCAAACCCTATGCGCCTGACAGGGCCGAGGTGAAGGTTGGCGACCGG AAGGTCATCCTCGCGGGCCTCGCCACCAACGCCATCAACACCTATCCCAAGGCCACACGCGAGATGCTCGACATTCCGCA GCCGGTGGAATGGGCCAAAGTCAATCTGCCTGAAATCGTCAAAGCCGATGCGATCAATATCGTTCTGAGCCACGCAGGCG TCGTTGCCGACCGCGATATTCTGCCGCTGCTGCCTGACGGTACGCTGCTGGTGGGCGGCCATGATCACCTGAACTTCGTG CATGAACAGGGCGCGACGCGTTATGTCCATACCGGTTCCTGGTGCACGTCCATGACGGTTGCGACCATCGCCGGTCCCGG CAAGGCCGCTGCCATCGAAACGGTCACCATCGATCGTGATGCTCCTGCCTCCCCTGCCCTCAAGACCCTGATCGAACAGA CGCTTGAAAAACACCTCACTGCGGAAGAGCGGGAAGTCGTCGGCAAGTCCGTCAAGGCGATGACCGTCGATGAGGCCGGC CGCCATGTGGCGCAGCTCATCGCTGCAAAGACCGGTGCCGATGTCGGCTTCGTCGCCCACACCTCCTTCGGTGCGGGCCT GCCGAACGGCGACATTCGCCGTTATGACTTCAACGCCTCGCTACGCTTCGACGGCAAGCTGATGGTGACGGAGGTGGATG GCGAGGCGCTTGCGCAAATCCTCAAACGCTGCAATCAGGACGGCGACATTCCGCTTACCGAGCGTACCGGCGACTATCTC TATGCCATGCCGGAGAAGCCGGAACAGAAAGGGCGCTACAAGCTCGTCTGCAACGACTGGTCGGCCACCAACCAGAAATC CTATTTCGGCCGTGGCGACCTGACCTTTACCGAGGTGGCGGATGTGAAGCTGAAGCAGACGGTTCTGGGCGGGCTTTCTT AA
Upstream 100 bases:
>100_bases TGAAACGCCAAACTTGTCATGCGGCTGTGATGATTGCCCATTAGGGCCTTCTCAGCCAGCAGGGGCGCCGCGGCGCAGTT TTGGATAATGGGGCAAGGAC
Downstream 100 bases:
>100_bases GACCCTTCGACAGCTTGGATAGGTCTCAGAACGACCGGATATCCAGCTTCCGGTCCTTGTGGGCCGGGTGCGTGCTGAAC ACGAAGATGCGGTCCAGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 453; Mature: 453
Protein sequence:
>453_residues MIFSSKRRDVLKLMAGTAMLPLLLTATPVMAQDVALRAIIISDLHSAYERIGQLLAAIETRIATDRVPHIILLNGDLFEI GNAVAARSAGEIEWTFLTALARLAPTVINIGNHEPDIDNDLANFVTRAQALGITVLSNIIDKRSGKPYAPDRAEVKVGDR KVILAGLATNAINTYPKATREMLDIPQPVEWAKVNLPEIVKADAINIVLSHAGVVADRDILPLLPDGTLLVGGHDHLNFV HEQGATRYVHTGSWCTSMTVATIAGPGKAAAIETVTIDRDAPASPALKTLIEQTLEKHLTAEEREVVGKSVKAMTVDEAG RHVAQLIAAKTGADVGFVAHTSFGAGLPNGDIRRYDFNASLRFDGKLMVTEVDGEALAQILKRCNQDGDIPLTERTGDYL YAMPEKPEQKGRYKLVCNDWSATNQKSYFGRGDLTFTEVADVKLKQTVLGGLS
Sequences:
>Translated_453_residues MIFSSKRRDVLKLMAGTAMLPLLLTATPVMAQDVALRAIIISDLHSAYERIGQLLAAIETRIATDRVPHIILLNGDLFEI GNAVAARSAGEIEWTFLTALARLAPTVINIGNHEPDIDNDLANFVTRAQALGITVLSNIIDKRSGKPYAPDRAEVKVGDR KVILAGLATNAINTYPKATREMLDIPQPVEWAKVNLPEIVKADAINIVLSHAGVVADRDILPLLPDGTLLVGGHDHLNFV HEQGATRYVHTGSWCTSMTVATIAGPGKAAAIETVTIDRDAPASPALKTLIEQTLEKHLTAEEREVVGKSVKAMTVDEAG RHVAQLIAAKTGADVGFVAHTSFGAGLPNGDIRRYDFNASLRFDGKLMVTEVDGEALAQILKRCNQDGDIPLTERTGDYL YAMPEKPEQKGRYKLVCNDWSATNQKSYFGRGDLTFTEVADVKLKQTVLGGLS >Mature_453_residues MIFSSKRRDVLKLMAGTAMLPLLLTATPVMAQDVALRAIIISDLHSAYERIGQLLAAIETRIATDRVPHIILLNGDLFEI GNAVAARSAGEIEWTFLTALARLAPTVINIGNHEPDIDNDLANFVTRAQALGITVLSNIIDKRSGKPYAPDRAEVKVGDR KVILAGLATNAINTYPKATREMLDIPQPVEWAKVNLPEIVKADAINIVLSHAGVVADRDILPLLPDGTLLVGGHDHLNFV HEQGATRYVHTGSWCTSMTVATIAGPGKAAAIETVTIDRDAPASPALKTLIEQTLEKHLTAEEREVVGKSVKAMTVDEAG RHVAQLIAAKTGADVGFVAHTSFGAGLPNGDIRRYDFNASLRFDGKLMVTEVDGEALAQILKRCNQDGDIPLTERTGDYL YAMPEKPEQKGRYKLVCNDWSATNQKSYFGRGDLTFTEVADVKLKQTVLGGLS
Specific function: Unknown
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48965; Mature: 48965
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFSSKRRDVLKLMAGTAMLPLLLTATPVMAQDVALRAIIISDLHSAYERIGQLLAAIET CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RIATDRVPHIILLNGDLFEIGNAVAARSAGEIEWTFLTALARLAPTVINIGNHEPDIDND HHHHCCCCEEEEECCCHHHHCCHHHHCCCCCEEHHHHHHHHHHCCCEEECCCCCCCCCHH LANFVTRAQALGITVLSNIIDKRSGKPYAPDRAEVKVGDRKVILAGLATNAINTYPKATR HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEEHHHHHHHCCCHHHH EMLDIPQPVEWAKVNLPEIVKADAINIVLSHAGVVADRDILPLLPDGTLLVGGHDHLNFV HHHCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCEECCCCEEEECCCHHHHHH HEQGATRYVHTGSWCTSMTVATIAGPGKAAAIETVTIDRDAPASPALKTLIEQTLEKHLT HHCCCCEEEECCCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC AEEREVVGKSVKAMTVDEAGRHVAQLIAAKTGADVGFVAHTSFGAGLPNGDIRRYDFNAS HHHHHHHCCCHHEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCE LRFDGKLMVTEVDGEALAQILKRCNQDGDIPLTERTGDYLYAMPEKPEQKGRYKLVCNDW EEECCEEEEEECCHHHHHHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCEEEEECCC SATNQKSYFGRGDLTFTEVADVKLKQTVLGGLS CCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCC >Mature Secondary Structure MIFSSKRRDVLKLMAGTAMLPLLLTATPVMAQDVALRAIIISDLHSAYERIGQLLAAIET CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RIATDRVPHIILLNGDLFEIGNAVAARSAGEIEWTFLTALARLAPTVINIGNHEPDIDND HHHHCCCCEEEEECCCHHHHCCHHHHCCCCCEEHHHHHHHHHHCCCEEECCCCCCCCCHH LANFVTRAQALGITVLSNIIDKRSGKPYAPDRAEVKVGDRKVILAGLATNAINTYPKATR HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEEHHHHHHHCCCHHHH EMLDIPQPVEWAKVNLPEIVKADAINIVLSHAGVVADRDILPLLPDGTLLVGGHDHLNFV HHHCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCEECCCCEEEECCCHHHHHH HEQGATRYVHTGSWCTSMTVATIAGPGKAAAIETVTIDRDAPASPALKTLIEQTLEKHLT HHCCCCEEEECCCCHHHEEEEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC AEEREVVGKSVKAMTVDEAGRHVAQLIAAKTGADVGFVAHTSFGAGLPNGDIRRYDFNAS HHHHHHHCCCHHEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCE LRFDGKLMVTEVDGEALAQILKRCNQDGDIPLTERTGDYLYAMPEKPEQKGRYKLVCNDW EEECCEEEEEECCHHHHHHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCEEEEECCC SATNQKSYFGRGDLTFTEVADVKLKQTVLGGLS CCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA