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The map label for this gene is pecS [H]

Identifier: 159184241

GI number: 159184241

Start: 268711

End: 269196

Strand: Reverse

Name: pecS [H]

Synonym: Atu0272

Alternate gene names: 159184241

Gene position: 269196-268711 (Counterclockwise)

Preceding gene: 15887624

Following gene: 15887621

Centisome position: 9.47

GC content: 61.52

Gene sequence:

>486_bases
ATGGACCACGTCGACCATATTCTCGCGCAATGGCGCAAGGAACGACCCGATCTCGATGTCGGCCCGATGGGGCTGCTCGG
GCGCCTGCACCGGCTCAGCACGTATCTTGGCCGCGAGGTGGAGGCGGTGCTCCTAAAACATGGCCTCTCCTCCTCCGCTT
TCGATGTGCTGGCGACATTGCGACGCGCGGGCTCGCCCTACCAACTCTCTCCCGGCGATCTGCTGGCTATGACCATGGTT
AGCTCCGGCACCATGACAAACCGGATCGACCAGCTGGAAAAAGCCGGGCTGGTGGAGCGCATTCACAATCCGCAGGACCG
GCGCAGCGTCTTGATATCGCTGACGGAGCGTGGCTTTGCCATCGTCGAGGAGGCGGTGGGTGCGCATGTCGACAACCAGC
ATCGTCTTGTCGCCCATCTCAGCGAAGAGGAGCGGGATACCCTTGATGGGTTGCTGAAGCGGTTTCTGCAGGACTTCGAG
GAATAG

Upstream 100 bases:

>100_bases
TCATCTCAAGAATCTCTATATCAAGATAGATTCAGCTTAGTCGATTTTATCTTGACGTCAAGATATCAATTGTTATGCCT
TGGTGATGAGCAAGAAACCC

Downstream 100 bases:

>100_bases
ATTTACGTCGCAGATGGAACCGTGCAATCGCGCGGGCCAGGGCGCTTGTCTACGTAGAGAAAATCCTGTAAGCAATTTTC
CATAAACCTGTACTACAGGT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MDHVDHILAQWRKERPDLDVGPMGLLGRLHRLSTYLGREVEAVLLKHGLSSSAFDVLATLRRAGSPYQLSPGDLLAMTMV
SSGTMTNRIDQLEKAGLVERIHNPQDRRSVLISLTERGFAIVEEAVGAHVDNQHRLVAHLSEEERDTLDGLLKRFLQDFE
E

Sequences:

>Translated_161_residues
MDHVDHILAQWRKERPDLDVGPMGLLGRLHRLSTYLGREVEAVLLKHGLSSSAFDVLATLRRAGSPYQLSPGDLLAMTMV
SSGTMTNRIDQLEKAGLVERIHNPQDRRSVLISLTERGFAIVEEAVGAHVDNQHRLVAHLSEEERDTLDGLLKRFLQDFE
E
>Mature_161_residues
MDHVDHILAQWRKERPDLDVGPMGLLGRLHRLSTYLGREVEAVLLKHGLSSSAFDVLATLRRAGSPYQLSPGDLLAMTMV
SSGTMTNRIDQLEKAGLVERIHNPQDRRSVLISLTERGFAIVEEAVGAHVDNQHRLVAHLSEEERDTLDGLLKRFLQDFE
E

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081927, Length=135, Percent_Identity=34.8148148148148, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18101; Mature: 18101

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHVDHILAQWRKERPDLDVGPMGLLGRLHRLSTYLGREVEAVLLKHGLSSSAFDVLATL
CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RRAGSPYQLSPGDLLAMTMVSSGTMTNRIDQLEKAGLVERIHNPQDRRSVLISLTERGFA
HHCCCCCEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IVEEAVGAHVDNQHRLVAHLSEEERDTLDGLLKRFLQDFEE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDHVDHILAQWRKERPDLDVGPMGLLGRLHRLSTYLGREVEAVLLKHGLSSSAFDVLATL
CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RRAGSPYQLSPGDLLAMTMVSSGTMTNRIDQLEKAGLVERIHNPQDRRSVLISLTERGFA
HHCCCCCEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
IVEEAVGAHVDNQHRLVAHLSEEERDTLDGLLKRFLQDFEE
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]