Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15889884
Identifier: 15889884
GI number: 15889884
Start: 2613295
End: 2614392
Strand: Direct
Name: 15889884
Synonym: Atu2629
Alternate gene names: NA
Gene position: 2613295-2614392 (Clockwise)
Preceding gene: 15889883
Following gene: 15889902
Centisome position: 91.97
GC content: 59.74
Gene sequence:
>1098_bases ATGCACAGCCTGATAAAACCCGAAAATCTCACCGCCACCCTGATGGGTAAGACCGGCGACGCCCTGCTCTGGCTGCTGGC GGCCCTGCATGTCACCGCCGTCGCCATCCTGCTCATGACCCTGCTGTCACTCAGTGAAGCGGGGGCTGCGGAGCAGAAGA TCGCCTGCACGGGCAGCGACATTCTCGTAGAGATGCGCAAGACCGATCCGCAAGCTTTCGCAAAGATCGAACAGGAAGCG GCCGCCATTCCGAACGGCAAGGGCAATTTCTGGCGCATCGAAAAGGCAGGCACGGCCCCGTCCTATCTTCTCGGTACCAT GCATGTCACCGATCCGCGCGTTCTGGAAATGCCAACCGCCGCCAGCCCCGCTTTCGAAAAGGCAGCGACTGTCATCGTGG AGTCGGACGAAATCGTCGACGACAAGAAGGTCGCGGCATCGCTGCTGAGCAAACCAGAACTCACCATGTTTCTGAATGGC AAATCGATCACCGACATCCTGTCGTCCGAAAATGTCGCGCGCCTCGAAAAAGGCCTGAAGGAGCGCGGCATTCCGCTGAA TGCGGTTTCGCGCATGAAGCCCTGGATGCTGTCGAGCTTCGTCGCCCTGCCCGCCTGCGAATTCGCCCGCAAGGCAACCG GTCTCTCCTTTCTCGACAAGAAGCTGGCCGAAGACGCGATTGCGGATGGAAAGCGGCTTGTCGGGCTGGAGACCATGGTG GAGCAGCTGACGGCCATGTCCGAACTGCCGATGGAATTCCATCTACAGGCGCTGATTGAAACGCTGGAACTCGGCGACCG TATGGATGACGTTATGACGACCATGACCGATCTCTATGTCGCCGGCGATATCGGCATGACCATGCCCATGCTGAAAAGCA TCGACCCCAAAAAGACAGCGGTAGAAAGCGAACAGGGCTACGCCGCCTTCGAACAACGTATCATCACCGACCGCAATCAC GTCATGGCCGACAGGGCCACCCCCGAGCTTGCCAAGGGCAATGTCTTCATGGCCGTCGGCGCACTGCATCTGCCCGGCGA GGAAGGCCTTGTCGAACTGCTGCGCGCAGAGGGCTTCACCCTGACGCGGGTCGACTGA
Upstream 100 bases:
>100_bases ACGCCCACCCACGTGCCTGAAGCAGGAATTGGTTAACCGTAAACATTAACCAGACGTCCAAACCGCCGTTCTATAAACGA ACAAGAACCGGATTGGACCG
Downstream 100 bases:
>100_bases ACCACGCAGTCTCGGTGCTGACAGGCCGGACATCGGTGCAGAACGGCCGCATGGTCGCCGGCACGATACGGCGGTGAAAC GGTCCGACGGCAAAAAGATA
Product: hypothetical protein
Products: NA
Alternate protein names: GumN Protein; Gumn Family Protein; GumN-Family Protein; Secreted Protein; Lipoprotein
Number of amino acids: Translated: 365; Mature: 365
Protein sequence:
>365_residues MHSLIKPENLTATLMGKTGDALLWLLAALHVTAVAILLMTLLSLSEAGAAEQKIACTGSDILVEMRKTDPQAFAKIEQEA AAIPNGKGNFWRIEKAGTAPSYLLGTMHVTDPRVLEMPTAASPAFEKAATVIVESDEIVDDKKVAASLLSKPELTMFLNG KSITDILSSENVARLEKGLKERGIPLNAVSRMKPWMLSSFVALPACEFARKATGLSFLDKKLAEDAIADGKRLVGLETMV EQLTAMSELPMEFHLQALIETLELGDRMDDVMTTMTDLYVAGDIGMTMPMLKSIDPKKTAVESEQGYAAFEQRIITDRNH VMADRATPELAKGNVFMAVGALHLPGEEGLVELLRAEGFTLTRVD
Sequences:
>Translated_365_residues MHSLIKPENLTATLMGKTGDALLWLLAALHVTAVAILLMTLLSLSEAGAAEQKIACTGSDILVEMRKTDPQAFAKIEQEA AAIPNGKGNFWRIEKAGTAPSYLLGTMHVTDPRVLEMPTAASPAFEKAATVIVESDEIVDDKKVAASLLSKPELTMFLNG KSITDILSSENVARLEKGLKERGIPLNAVSRMKPWMLSSFVALPACEFARKATGLSFLDKKLAEDAIADGKRLVGLETMV EQLTAMSELPMEFHLQALIETLELGDRMDDVMTTMTDLYVAGDIGMTMPMLKSIDPKKTAVESEQGYAAFEQRIITDRNH VMADRATPELAKGNVFMAVGALHLPGEEGLVELLRAEGFTLTRVD >Mature_365_residues MHSLIKPENLTATLMGKTGDALLWLLAALHVTAVAILLMTLLSLSEAGAAEQKIACTGSDILVEMRKTDPQAFAKIEQEA AAIPNGKGNFWRIEKAGTAPSYLLGTMHVTDPRVLEMPTAASPAFEKAATVIVESDEIVDDKKVAASLLSKPELTMFLNG KSITDILSSENVARLEKGLKERGIPLNAVSRMKPWMLSSFVALPACEFARKATGLSFLDKKLAEDAIADGKRLVGLETMV EQLTAMSELPMEFHLQALIETLELGDRMDDVMTTMTDLYVAGDIGMTMPMLKSIDPKKTAVESEQGYAAFEQRIITDRNH VMADRATPELAKGNVFMAVGALHLPGEEGLVELLRAEGFTLTRVD
Specific function: Unknown
COG id: COG3735
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39573; Mature: 39573
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSLIKPENLTATLMGKTGDALLWLLAALHVTAVAILLMTLLSLSEAGAAEQKIACTGSD CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCH ILVEMRKTDPQAFAKIEQEAAAIPNGKGNFWRIEKAGTAPSYLLGTMHVTDPRVLEMPTA HEEEEHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHEEEEECCCCCEEECCCC ASPAFEKAATVIVESDEIVDDKKVAASLLSKPELTMFLNGKSITDILSSENVARLEKGLK CCCHHHHHEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCHHHHHHHHH ERGIPLNAVSRMKPWMLSSFVALPACEFARKATGLSFLDKKLAEDAIADGKRLVGLETMV HCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEECHHHHH EQLTAMSELPMEFHLQALIETLELGDRMDDVMTTMTDLYVAGDIGMTMPMLKSIDPKKTA HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCCCCHHHHHHCCCCHHHH VESEQGYAAFEQRIITDRNHVMADRATPELAKGNVFMAVGALHLPGEEGLVELLRAEGFT HCCCCCHHHHHHHHHCCCCCEEECCCCCCHHCCCEEEEEEEEECCCHHHHHHHHHHCCCE LTRVD EEECC >Mature Secondary Structure MHSLIKPENLTATLMGKTGDALLWLLAALHVTAVAILLMTLLSLSEAGAAEQKIACTGSD CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCH ILVEMRKTDPQAFAKIEQEAAAIPNGKGNFWRIEKAGTAPSYLLGTMHVTDPRVLEMPTA HEEEEHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHEEEEECCCCCEEECCCC ASPAFEKAATVIVESDEIVDDKKVAASLLSKPELTMFLNGKSITDILSSENVARLEKGLK CCCHHHHHEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCHHHHHHHHH ERGIPLNAVSRMKPWMLSSFVALPACEFARKATGLSFLDKKLAEDAIADGKRLVGLETMV HCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEECHHHHH EQLTAMSELPMEFHLQALIETLELGDRMDDVMTTMTDLYVAGDIGMTMPMLKSIDPKKTA HHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCCCCHHHHHHCCCCHHHH VESEQGYAAFEQRIITDRNHVMADRATPELAKGNVFMAVGALHLPGEEGLVELLRAEGFT HCCCCCHHHHHHHHHCCCCCEEECCCCCCHHCCCEEEEEEEEECCCHHHHHHHHHHCCCE LTRVD EEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA