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The map label for this gene is ynhG [H]

Identifier: 15889613

GI number: 15889613

Start: 2313915

End: 2314532

Strand: Reverse

Name: ynhG [H]

Synonym: Atu2336

Alternate gene names: 15889613

Gene position: 2314532-2313915 (Counterclockwise)

Preceding gene: 159185162

Following gene: 15889612

Centisome position: 81.45

GC content: 61.65

Gene sequence:

>618_bases
ATGTCTATTTCACGTCGTGGTGTTCTGTTCGGACTGCCGCTGTTTCTGGCCGGCTGCGCGCACACCGGTATTGGCGAGCA
GAGGCTCAATTATGCGGCAAAACCGGAAGAGAAGTTTCCGCTTCCCGCCATGCATCTCGATAAGGTCAAGCCGGAACTGC
GCCGGCAGGAGGTCACCTATGACACCAGCCATCCCGCCGGAACGGTGGTGGTGGATACACCGGCGCGGCGGCTGTATTAT
GTTATGGGCGAGGGTCGCGCCATGCGTTACGGCGTCGGCGTCGGCCGGCAGGGGCTTGCGCTGAAGGGCGATGCCTATAT
CGGCCGCAAGTCCGAATGGCCTTCCTGGACGCCGACCGCAAACATGATGCGCCGTGATCCGCGTAATCTGAAATTCGCCG
GCGGCATGCCTGGTGGCCCCAACAACCCGCTCGGCGCACGGGCGCTTTATCTTTATCGCGGCGGCAACGACACCATGTTC
CGTCTGCACGGAACCAATCAGCCGCAATCCATCGGCCACGCCATGTCGAGCGGCTGTATCCGCATGCTGAACCACGACAT
CATCGATCTTTACAGCCGCGTGCCTGTCGGCTCCAGGGTCGTGGTGCTGCAAGCCTGA

Upstream 100 bases:

>100_bases
GGCGTCGGTTGCGGTACGTTAGTTACTGCAACCTCACATTAGAGATTTGTTAACCATAAAATTATACCTCTCGTTAATCA
CATGATTTGGCGGGGGTTAC

Downstream 100 bases:

>100_bases
CGGGGAGGCGGATTTTTCCGCCTTTGCCACGCGAAAAAATGCCTGTATCCTTGGGTTGATTTTTTCCACATAAGTCTGGT
TTTATGGTGGAAAATCAACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSISRRGVLFGLPLFLAGCAHTGIGEQRLNYAAKPEEKFPLPAMHLDKVKPELRRQEVTYDTSHPAGTVVVDTPARRLYY
VMGEGRAMRYGVGVGRQGLALKGDAYIGRKSEWPSWTPTANMMRRDPRNLKFAGGMPGGPNNPLGARALYLYRGGNDTMF
RLHGTNQPQSIGHAMSSGCIRMLNHDIIDLYSRVPVGSRVVVLQA

Sequences:

>Translated_205_residues
MSISRRGVLFGLPLFLAGCAHTGIGEQRLNYAAKPEEKFPLPAMHLDKVKPELRRQEVTYDTSHPAGTVVVDTPARRLYY
VMGEGRAMRYGVGVGRQGLALKGDAYIGRKSEWPSWTPTANMMRRDPRNLKFAGGMPGGPNNPLGARALYLYRGGNDTMF
RLHGTNQPQSIGHAMSSGCIRMLNHDIIDLYSRVPVGSRVVVLQA
>Mature_204_residues
SISRRGVLFGLPLFLAGCAHTGIGEQRLNYAAKPEEKFPLPAMHLDKVKPELRRQEVTYDTSHPAGTVVVDTPARRLYYV
MGEGRAMRYGVGVGRQGLALKGDAYIGRKSEWPSWTPTANMMRRDPRNLKFAGGMPGGPNNPLGARALYLYRGGNDTMFR
LHGTNQPQSIGHAMSSGCIRMLNHDIIDLYSRVPVGSRVVVLQA

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=138, Percent_Identity=41.304347826087, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788299, Length=139, Percent_Identity=35.9712230215827, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787040, Length=149, Percent_Identity=34.8993288590604, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787356, Length=142, Percent_Identity=33.8028169014084, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 22594; Mature: 22463

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISRRGVLFGLPLFLAGCAHTGIGEQRLNYAAKPEEKFPLPAMHLDKVKPELRRQEVTY
CCCCCCCCEEEHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHCCC
DTSHPAGTVVVDTPARRLYYVMGEGRAMRYGVGVGRQGLALKGDAYIGRKSEWPSWTPTA
CCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEECCEEECCCCCCCCCCCCH
NMMRRDPRNLKFAGGMPGGPNNPLGARALYLYRGGNDTMFRLHGTNQPQSIGHAMSSGCI
HHHHCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHH
RMLNHDIIDLYSRVPVGSRVVVLQA
HHHHHHHHHHHHCCCCCCEEEEEEC
>Mature Secondary Structure 
SISRRGVLFGLPLFLAGCAHTGIGEQRLNYAAKPEEKFPLPAMHLDKVKPELRRQEVTY
CCCCCCCEEEHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHCCC
DTSHPAGTVVVDTPARRLYYVMGEGRAMRYGVGVGRQGLALKGDAYIGRKSEWPSWTPTA
CCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEECCEEECCCCCCCCCCCCH
NMMRRDPRNLKFAGGMPGGPNNPLGARALYLYRGGNDTMFRLHGTNQPQSIGHAMSSGCI
HHHHCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHH
RMLNHDIIDLYSRVPVGSRVVVLQA
HHHHHHHHHHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]