Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is yhbW [C]
Identifier: 15889583
GI number: 15889583
Start: 2282769
End: 2283830
Strand: Reverse
Name: yhbW [C]
Synonym: Atu2307
Alternate gene names: 15889583
Gene position: 2283830-2282769 (Counterclockwise)
Preceding gene: 159185154
Following gene: 15889582
Centisome position: 80.37
GC content: 61.39
Gene sequence:
>1062_bases ATGGAACTCGGTCTTTACACATTCGCGGATGTCAATCCCAATCCCGCCGATGGCCGCGGGCCTGAAGGCGCGCGCCGGCT GCGGGAATTGCTCGAGGAAATCGAACTCGCCGATCAGGTCGGGCTCGATGTTTTCGGGCTTGGGGAACATCACCGCCCTG ACTATGTCGTCTCCTCGCCCTCCACCGTGCTTGCGGCTGCAGCGGTTAAGACGAAGAACATTCGGCTGACGAGCGCCGTC TCGGTGTTGAGTTCAGATGACCCGGTGCGGGTGTTCCAGCAATTTTCGACCGTCGATCTTCTGTCGAACGGTCGCGCCGA AATCATGGCCGGGCGCGGCTCCTTCATCGAATCCTACCCGCTGTTCGGTTACGATCTCGAAGATTACGACGTGCTCTTCG CTGAAAAGCTGGATCTGCTGCTGGCGCTGCGCGAACAGGAAGTCGTCACCTGGTCCGGCACCAAACATCCTGCCATCAAC GGGCGCGGCGTTTATCCACGGCCCTTGCAGGAACGTCTGCCGGTCTGGATCGCGGTCGGCGGCACACCGCAATCGGTGGC GCGGGCCGGCGCCATGGGCCTGCCGGTGGCGCTTGCCATCATTGGCGGTGAATACCGCCGTTTTGCACCGTTGTTCGATC TCTACCATGAAGCCGCGCGCCGGGCAGGGCAGGAAAAAACCAAGCTGCGCACCAGCATCAATGTGCACGGCTTCATCGCC GATACGACCGACAAGGCTGCCGACCAGTTTTACGGCCCGCAGGCGGAGGTGATGAACCGCATCGGCCGCGAGCGCGGCTG GGGACCGACGAACCGTGCGCATTTCGATGCGGCGCGCGGGCCGGAGGGCAATCTCTTTCTCGGCGAGCCGGAACTGGTGG CGGAAAAGATCATCAAGGCACATGGCGTCTTCAAGAATGATCGTTTCCTGCTGCAGATGGCCATCGGCCTGATGCCGCAT GATCAGATCATGCGCGGCATCGAGCTTTATGGTACGAAAGTCGCCCCTCTTGTCAGAAAAGAATTGACGGGGAGCGCCGA TCCGGTGAAAGCCACGGCCTGA
Upstream 100 bases:
>100_bases TGCGCCCATCCATTTTTTCGAAGCTAAGCTTCCAGATTTTGCGTTTGTGTGAAGGGCCCTCCGTGCCTATCTCTCAGGCA AGCAAATAGAGGTATCATCT
Downstream 100 bases:
>100_bases TGATTACCAAGGCGGGCGTTTTCAGACCCGCCAGACAGAACGACGGACAGAGACATGGTTATTTCCACCGACGAAGAACT TGATCTGCTGAAGGATATCG
Product: monooxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MELGLYTFADVNPNPADGRGPEGARRLRELLEEIELADQVGLDVFGLGEHHRPDYVVSSPSTVLAAAAVKTKNIRLTSAV SVLSSDDPVRVFQQFSTVDLLSNGRAEIMAGRGSFIESYPLFGYDLEDYDVLFAEKLDLLLALREQEVVTWSGTKHPAIN GRGVYPRPLQERLPVWIAVGGTPQSVARAGAMGLPVALAIIGGEYRRFAPLFDLYHEAARRAGQEKTKLRTSINVHGFIA DTTDKAADQFYGPQAEVMNRIGRERGWGPTNRAHFDAARGPEGNLFLGEPELVAEKIIKAHGVFKNDRFLLQMAIGLMPH DQIMRGIELYGTKVAPLVRKELTGSADPVKATA
Sequences:
>Translated_353_residues MELGLYTFADVNPNPADGRGPEGARRLRELLEEIELADQVGLDVFGLGEHHRPDYVVSSPSTVLAAAAVKTKNIRLTSAV SVLSSDDPVRVFQQFSTVDLLSNGRAEIMAGRGSFIESYPLFGYDLEDYDVLFAEKLDLLLALREQEVVTWSGTKHPAIN GRGVYPRPLQERLPVWIAVGGTPQSVARAGAMGLPVALAIIGGEYRRFAPLFDLYHEAARRAGQEKTKLRTSINVHGFIA DTTDKAADQFYGPQAEVMNRIGRERGWGPTNRAHFDAARGPEGNLFLGEPELVAEKIIKAHGVFKNDRFLLQMAIGLMPH DQIMRGIELYGTKVAPLVRKELTGSADPVKATA >Mature_353_residues MELGLYTFADVNPNPADGRGPEGARRLRELLEEIELADQVGLDVFGLGEHHRPDYVVSSPSTVLAAAAVKTKNIRLTSAV SVLSSDDPVRVFQQFSTVDLLSNGRAEIMAGRGSFIESYPLFGYDLEDYDVLFAEKLDLLLALREQEVVTWSGTKHPAIN GRGVYPRPLQERLPVWIAVGGTPQSVARAGAMGLPVALAIIGGEYRRFAPLFDLYHEAARRAGQEKTKLRTSINVHGFIA DTTDKAADQFYGPQAEVMNRIGRERGWGPTNRAHFDAARGPEGNLFLGEPELVAEKIIKAHGVFKNDRFLLQMAIGLMPH DQIMRGIELYGTKVAPLVRKELTGSADPVKATA
Specific function: Unknown
COG id: COG2141
COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial luciferase oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011251 - InterPro: IPR016048 [H]
Pfam domain/function: PF00296 Bac_luciferase [H]
EC number: NA
Molecular weight: Translated: 38674; Mature: 38674
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELGLYTFADVNPNPADGRGPEGARRLRELLEEIELADQVGLDVFGLGEHHRPDYVVSSP CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCC STVLAAAAVKTKNIRLTSAVSVLSSDDPVRVFQQFSTVDLLSNGRAEIMAGRGSFIESYP CHHHHHHHHHCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCC LFGYDLEDYDVLFAEKLDLLLALREQEVVTWSGTKHPAINGRGVYPRPLQERLPVWIAVG CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHCCCEEEEEC GTPQSVARAGAMGLPVALAIIGGEYRRFAPLFDLYHEAARRAGQEKTKLRTSINVHGFIA CCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEEEEEE DTTDKAADQFYGPQAEVMNRIGRERGWGPTNRAHFDAARGPEGNLFLGEPELVAEKIIKA CCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHH HGVFKNDRFLLQMAIGLMPHDQIMRGIELYGTKVAPLVRKELTGSADPVKATA HCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MELGLYTFADVNPNPADGRGPEGARRLRELLEEIELADQVGLDVFGLGEHHRPDYVVSSP CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCC STVLAAAAVKTKNIRLTSAVSVLSSDDPVRVFQQFSTVDLLSNGRAEIMAGRGSFIESYP CHHHHHHHHHCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCC LFGYDLEDYDVLFAEKLDLLLALREQEVVTWSGTKHPAINGRGVYPRPLQERLPVWIAVG CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHCCCEEEEEC GTPQSVARAGAMGLPVALAIIGGEYRRFAPLFDLYHEAARRAGQEKTKLRTSINVHGFIA CCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEEEEEE DTTDKAADQFYGPQAEVMNRIGRERGWGPTNRAHFDAARGPEGNLFLGEPELVAEKIIKA CCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHH HGVFKNDRFLLQMAIGLMPHDQIMRGIELYGTKVAPLVRKELTGSADPVKATA HCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424; 8796346 [H]