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The map label for this gene is clpS

Identifier: 15889508

GI number: 15889508

Start: 2204085

End: 2204396

Strand: Reverse

Name: clpS

Synonym: Atu2232

Alternate gene names: 15889508

Gene position: 2204396-2204085 (Counterclockwise)

Preceding gene: 159185114

Following gene: 159185109

Centisome position: 77.58

GC content: 59.29

Gene sequence:

>312_bases
ATGAGTGACAGTCCTGTCGATCTCAAACCAAAACCGAAGGTCAAACCGAAGCTGGAGCGGCCTAAGCTCTACAAGGTCAT
GCTGCTGAATGACGACTATACGCCGCGCGAATTTGTCACCGTGGTGCTGAAGGCCGTCTTTCGCATGAGCGAGGATACCG
GACGCCGGGTGATGATGACGGCGCATCGCTTCGGCAGCGCGGTGGTGGTTGTCTGCGAGCGCGATATTGCCGAGACGAAG
GCCAAGGAGGCGACCGATCTCGGCAAGGAAGCGGGCTTCCCGCTGATGTTCACGACCGAGCCGGAGGAGTGA

Upstream 100 bases:

>100_bases
GTTGCGGTGCAGTATAAGTGGGTTCAAGGCGCGATCTTTCGCCATCCAGCGGGATTTTCCCCCGAACCACGATGATGAAC
CACCATGACGAGCGACAATC

Downstream 100 bases:

>100_bases
GCGCTTTTACGGCGGCTCTGGGGTTGCCGAGATTGACGAGTTGTCACTAATCCTGCCGGATCTGGAAACCTGTCTTGTTC
TGCACGAAGCCGCAGCTTTC

Product: ATP-dependent Clp protease adaptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 102

Protein sequence:

>103_residues
MSDSPVDLKPKPKVKPKLERPKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMTAHRFGSAVVVVCERDIAETK
AKEATDLGKEAGFPLMFTTEPEE

Sequences:

>Translated_103_residues
MSDSPVDLKPKPKVKPKLERPKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMTAHRFGSAVVVVCERDIAETK
AKEATDLGKEAGFPLMFTTEPEE
>Mature_102_residues
SDSPVDLKPKPKVKPKLERPKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMTAHRFGSAVVVVCERDIAETKA
KEATDLGKEAGFPLMFTTEPEE

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=94, Percent_Identity=37.2340425531915, Blast_Score=65, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS2_AGRT5 (Q8UD95)

Other databases:

- EMBL:   AE007869
- PIR:   AG2850
- PIR:   E97627
- RefSeq:   NP_355189.1
- ProteinModelPortal:   Q8UD95
- SMR:   Q8UD95
- STRING:   Q8UD95
- GeneID:   1134270
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu2232
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   CVVAVFT
- PhylomeDB:   Q8UD95
- ProtClustDB:   PRK13019
- BioCyc:   ATUM176299-1:ATU2232-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 11690; Mature: 11559

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSPVDLKPKPKVKPKLERPKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMT
CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
AHRFGSAVVVVCERDIAETKAKEATDLGKEAGFPLMFTTEPEE
ECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
>Mature Secondary Structure 
SDSPVDLKPKPKVKPKLERPKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMT
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
AHRFGSAVVVVCERDIAETKAKEATDLGKEAGFPLMFTTEPEE
ECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194