Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889490
Identifier: 15889490
GI number: 15889490
Start: 2182078
End: 2183178
Strand: Direct
Name: 15889490
Synonym: Atu2214
Alternate gene names: NA
Gene position: 2182078-2183178 (Clockwise)
Preceding gene: 15889489
Following gene: 15889491
Centisome position: 76.79
GC content: 62.31
Gene sequence:
>1101_bases ATGACCACACCGCTCGCGCAACGTATCAAATCCCTTATCCGGCTTAACGGTCCGCTCAGCGTCACCGACTTCTTTTCGCT GTGCCTCGCCGATCCCGAACACGGTTATTACAAGAGCCGCGAGCCGTTCGGCCGTTCGGGTGATTTCATCACCGCGCCTG AAGTCAGCCAGCTTTTCGGCGAAATGCTCGGTGTTTTCGTCGTCCACGCCTGGCAGCGGCATGGCGCCCCGGCACAAACG CAGCTGGTGGAAATCGGCCCCGGCCGCGGCACCATGATGTCGGACATGCTGCGCGTCATCCGCCGCATCGCGCCGCCGCT TTACGAGACGATGCGGGTGCATCTGGTGGAGACAAGCCCCCGCCTTTCCGCCATCCAGAAGGAAACGCTGACAGCACATG CGGACCGGCTGACCTGGCATGATAGTTTTGACGACGTGCCGGAAGGTTTTCTGCTGCTTGTCGCCAACGAGCTGTTCGAT GCCATTCCGATCCGGCAATTCGTCAGGACGCCGCAGGGTTTCCGGGAACGTGTCGTCAGCCTCGATGCCAATGGCGAACT CGTTTTCTCGACGGGCCTTGCCGGCATAGACCCTACCCTCCTGCCACCGCAGCCCGAACGGCAACAGCTTGGCACTGTAT TCGAGGTTTCCCCTGCCCGCGAAGCCGTGATGACCGCGATCTGCCAGCGCCTCTCGGTCCATGGGGGCACGGCGCTTGCG ATCGATTACGGCCATCTGGTCGCCGGTTATGGTGACACGCTGCAGGCCATGCGCAACCACGCCTTCGACCCACCGCTTGC GCATCCCGGCGAGGCCGATCTCACCAGCCATGTGGATTTCGAAAGCCTCGTCAAAACGGCACAAGCGACCGGCGTGCATG TCAACGGCGCCCTGAGGCAGGGCGATTTTCTCCACGGCCTCGGCCTCAAGGAAAGGGCGAGCGCGCTTGCCGCCAAGGCG ACACCCGACCAGACGCTTGAAATTGCCGAAGCGGTGAACCGCCTCGCCGGCGAAGGCGCCGGCAAGATGGGGGAACTTTT CAAGGTCATCGCCGTTTCAAGTCCCGCGCTTCATCTTCTGCCGTTTCGTGCGGTGGATTGA
Upstream 100 bases:
>100_bases CATGGGCATGGTGCTGTCAACACCGATGTTCCTTTTGGGCCTCTGGGCCGTCCTGCGGGCACGCAGCGCGACGAAAAGCG CCTGAGCGGTATGATCGCCC
Downstream 100 bases:
>100_bases CAGCGCAATAACCTCTGGGCCAACATCGCCGCGACACACGAAGCAGGCACACTGCATCACACCGCCACGCAATGCCGTGG CAACAGGAAACATCTCGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MTTPLAQRIKSLIRLNGPLSVTDFFSLCLADPEHGYYKSREPFGRSGDFITAPEVSQLFGEMLGVFVVHAWQRHGAPAQT QLVEIGPGRGTMMSDMLRVIRRIAPPLYETMRVHLVETSPRLSAIQKETLTAHADRLTWHDSFDDVPEGFLLLVANELFD AIPIRQFVRTPQGFRERVVSLDANGELVFSTGLAGIDPTLLPPQPERQQLGTVFEVSPAREAVMTAICQRLSVHGGTALA IDYGHLVAGYGDTLQAMRNHAFDPPLAHPGEADLTSHVDFESLVKTAQATGVHVNGALRQGDFLHGLGLKERASALAAKA TPDQTLEIAEAVNRLAGEGAGKMGELFKVIAVSSPALHLLPFRAVD
Sequences:
>Translated_366_residues MTTPLAQRIKSLIRLNGPLSVTDFFSLCLADPEHGYYKSREPFGRSGDFITAPEVSQLFGEMLGVFVVHAWQRHGAPAQT QLVEIGPGRGTMMSDMLRVIRRIAPPLYETMRVHLVETSPRLSAIQKETLTAHADRLTWHDSFDDVPEGFLLLVANELFD AIPIRQFVRTPQGFRERVVSLDANGELVFSTGLAGIDPTLLPPQPERQQLGTVFEVSPAREAVMTAICQRLSVHGGTALA IDYGHLVAGYGDTLQAMRNHAFDPPLAHPGEADLTSHVDFESLVKTAQATGVHVNGALRQGDFLHGLGLKERASALAAKA TPDQTLEIAEAVNRLAGEGAGKMGELFKVIAVSSPALHLLPFRAVD >Mature_365_residues TTPLAQRIKSLIRLNGPLSVTDFFSLCLADPEHGYYKSREPFGRSGDFITAPEVSQLFGEMLGVFVVHAWQRHGAPAQTQ LVEIGPGRGTMMSDMLRVIRRIAPPLYETMRVHLVETSPRLSAIQKETLTAHADRLTWHDSFDDVPEGFLLLVANELFDA IPIRQFVRTPQGFRERVVSLDANGELVFSTGLAGIDPTLLPPQPERQQLGTVFEVSPAREAVMTAICQRLSVHGGTALAI DYGHLVAGYGDTLQAMRNHAFDPPLAHPGEADLTSHVDFESLVKTAQATGVHVNGALRQGDFLHGLGLKERASALAAKAT PDQTLEIAEAVNRLAGEGAGKMGELFKVIAVSSPALHLLPFRAVD
Specific function: Unknown
COG id: COG1565
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21396487, Length=375, Percent_Identity=34.4, Blast_Score=204, Evalue=8e-53, Organism=Homo sapiens, GI145701028, Length=355, Percent_Identity=25.9154929577465, Blast_Score=99, Evalue=7e-21, Organism=Caenorhabditis elegans, GI193211224, Length=384, Percent_Identity=33.0729166666667, Blast_Score=200, Evalue=9e-52, Organism=Drosophila melanogaster, GI24645885, Length=375, Percent_Identity=34.4, Blast_Score=203, Evalue=2e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39776; Mature: 39645
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPLAQRIKSLIRLNGPLSVTDFFSLCLADPEHGYYKSREPFGRSGDFITAPEVSQLFG CCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCHHHHHHH EMLGVFVVHAWQRHGAPAQTQLVEIGPGRGTMMSDMLRVIRRIAPPLYETMRVHLVETSP HHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHEEEEEECCC RLSAIQKETLTAHADRLTWHDSFDDVPEGFLLLVANELFDAIPIRQFVRTPQGFRERVVS HHHHHHHHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEE LDANGELVFSTGLAGIDPTLLPPQPERQQLGTVFEVSPAREAVMTAICQRLSVHGGTALA ECCCCCEEEECCCCCCCCCCCCCCCCHHHCCCEEEECHHHHHHHHHHHHHHHCCCCEEEE IDYGHLVAGYGDTLQAMRNHAFDPPLAHPGEADLTSHVDFESLVKTAQATGVHVNGALRQ EECCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHCCEEECCCCCC GDFLHGLGLKERASALAAKATPDQTLEIAEAVNRLAGEGAGKMGELFKVIAVSSPALHLL CCCHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEC PFRAVD CCCCCC >Mature Secondary Structure TTPLAQRIKSLIRLNGPLSVTDFFSLCLADPEHGYYKSREPFGRSGDFITAPEVSQLFG CCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCHHHHHHH EMLGVFVVHAWQRHGAPAQTQLVEIGPGRGTMMSDMLRVIRRIAPPLYETMRVHLVETSP HHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHEEEEEECCC RLSAIQKETLTAHADRLTWHDSFDDVPEGFLLLVANELFDAIPIRQFVRTPQGFRERVVS HHHHHHHHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEE LDANGELVFSTGLAGIDPTLLPPQPERQQLGTVFEVSPAREAVMTAICQRLSVHGGTALA ECCCCCEEEECCCCCCCCCCCCCCCCHHHCCCEEEECHHHHHHHHHHHHHHHCCCCEEEE IDYGHLVAGYGDTLQAMRNHAFDPPLAHPGEADLTSHVDFESLVKTAQATGVHVNGALRQ EECCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHCCEEECCCCCC GDFLHGLGLKERASALAAKATPDQTLEIAEAVNRLAGEGAGKMGELFKVIAVSSPALHLL CCCHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEC PFRAVD CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA