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The map label for this gene is cspA [C]

Identifier: 15889479

GI number: 15889479

Start: 2173922

End: 2174137

Strand: Direct

Name: cspA [C]

Synonym: Atu2200

Alternate gene names: 15889479

Gene position: 2173922-2174137 (Clockwise)

Preceding gene: 15889478

Following gene: 159185099

Centisome position: 76.5

GC content: 51.85

Gene sequence:

>216_bases
ATGGCCGAAACTGGCACCGTAAAATTCTTTAATACCGACAAAGGCTTCGGCTTCATCAAGCCAGACAATGGTGGCGCTGA
TATCTTTGTTCACATCTCTGCCGTACAGGCTTCTGGCCTGTCCGGACTTTCAGAAAATCAGAAAGTGAGCTTCGACACGG
AACCGGATCGTCGCGGCAAGGGCCCGAAGGCAGTCAATCTGCAGATTGCTGGCTGA

Upstream 100 bases:

>100_bases
ATTTTCTCAATAGTCAAGAACTGCCTGCCAACGCCCACGCGGGGCAAAACTGTAATGCTGCCTGTAGCTGAACGCGGGCA
GAGCGAAAAGGACCTGATGC

Downstream 100 bases:

>100_bases
CCCTAAAACGGCTTTCTTTTCTAGTTGAAGCCCGGCAGGAATGCCGGGTTTTTTTATGCGCCCTGCAGGCCTCTATTGGC
CAATTCAAAGCCCCTTGAGA

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MAETGTVKFFNTDKGFGFIKPDNGGADIFVHISAVQASGLSGLSENQKVSFDTEPDRRGKGPKAVNLQIAG

Sequences:

>Translated_71_residues
MAETGTVKFFNTDKGFGFIKPDNGGADIFVHISAVQASGLSGLSENQKVSFDTEPDRRGKGPKAVNLQIAG
>Mature_70_residues
AETGTVKFFNTDKGFGFIKPDNGGADIFVHISAVQASGLSGLSENQKVSFDTEPDRRGKGPKAVNLQIAG

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=54.6875, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=57.8125, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=53.030303030303, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=51.5625, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=50.7936507936508, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1788126, Length=63, Percent_Identity=50.7936507936508, Blast_Score=65, Evalue=7e-13,
Organism=Escherichia coli, GI1787107, Length=61, Percent_Identity=50.8196721311475, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7470; Mature: 7339

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETGTVKFFNTDKGFGFIKPDNGGADIFVHISAVQASGLSGLSENQKVSFDTEPDRRGK
CCCCCEEEEEECCCCCEEEECCCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCC
GPKAVNLQIAG
CCCEEEEEEEC
>Mature Secondary Structure 
AETGTVKFFNTDKGFGFIKPDNGGADIFVHISAVQASGLSGLSENQKVSFDTEPDRRGK
CCCCEEEEEECCCCCEEEECCCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCC
GPKAVNLQIAG
CCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]