Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159185099
Identifier: 159185099
GI number: 159185099
Start: 2175098
End: 2175697
Strand: Direct
Name: 159185099
Synonym: Atu2203
Alternate gene names: NA
Gene position: 2175098-2175697 (Clockwise)
Preceding gene: 15889479
Following gene: 17936087
Centisome position: 76.55
GC content: 59.33
Gene sequence:
>600_bases ATGGACAAGACGCTTAAAATGCTGATCGCTGGCGGCGCCTTCGCCTTGATGGCGGGTTATGCAAACGCCGCCATGGTCGC CACGACAGCATCGGATATTTCCGTTCGCTCGGGCCCCGGTGAAGACTACCCCGAACTGGGCCTTGCCACCCGCGGCAGCA ACGCCGTTCTGGATGGCTGCATGGAAGGCAGCAGCTGGTGCCGCATCGAAGTCAACGGCCTTCGCGGCTGGGCTCATGCC GACTACCTGAATGTCATGTATGAGGGCTCGCCGGTCATTCTCGAACAGCGCCGCTCGGACCTTAGCGTGCCCGTGGTGAC CTATGAAAAGACCGCGAGCGTTCAGGCAGAACCGAACCCGGGTGACCCGAACCTTGGCCGCGTCGGTGAAGTTGATCCGC CGCAATCGGTCATCACCTATATGGACGAGCATCCTGCCGAGACCGTCACCTATGACGGCGACATCGCAGTGGGAAGTGTT CTCCCCGCAGATACCCGTATGGTTGAAGTCCCCGACTATCAGTATCGGTATGTTCGGGTGAATGACGTCCCGGTTCTCGT GGAACCCTCGACCCGTCGTATCGTCTACGTTTATCAATAA
Upstream 100 bases:
>100_bases ACAATATTTTCCGGGCTTGCAGCGACAATTTCCGGCGGAAAATGTGGAACGCCCCGTCGGCTGCGACGTTGTAGCACCAG TCTTAAAAGGAGTGAGACAC
Downstream 100 bases:
>100_bases CACCACCATCACGACAAAAAATGAAGGAGAGCGCGGAGTTTCCGCGCTCTTTTCTATTTCCGGTAAAGGCCAATCAGGAT TCCAGTTGCACCCGCACCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 199; Mature: 199
Protein sequence:
>199_residues MDKTLKMLIAGGAFALMAGYANAAMVATTASDISVRSGPGEDYPELGLATRGSNAVLDGCMEGSSWCRIEVNGLRGWAHA DYLNVMYEGSPVILEQRRSDLSVPVVTYEKTASVQAEPNPGDPNLGRVGEVDPPQSVITYMDEHPAETVTYDGDIAVGSV LPADTRMVEVPDYQYRYVRVNDVPVLVEPSTRRIVYVYQ
Sequences:
>Translated_199_residues MDKTLKMLIAGGAFALMAGYANAAMVATTASDISVRSGPGEDYPELGLATRGSNAVLDGCMEGSSWCRIEVNGLRGWAHA DYLNVMYEGSPVILEQRRSDLSVPVVTYEKTASVQAEPNPGDPNLGRVGEVDPPQSVITYMDEHPAETVTYDGDIAVGSV LPADTRMVEVPDYQYRYVRVNDVPVLVEPSTRRIVYVYQ >Mature_199_residues MDKTLKMLIAGGAFALMAGYANAAMVATTASDISVRSGPGEDYPELGLATRGSNAVLDGCMEGSSWCRIEVNGLRGWAHA DYLNVMYEGSPVILEQRRSDLSVPVVTYEKTASVQAEPNPGDPNLGRVGEVDPPQSVITYMDEHPAETVTYDGDIAVGSV LPADTRMVEVPDYQYRYVRVNDVPVLVEPSTRRIVYVYQ
Specific function: Unknown
COG id: COG4991
COG function: function code S; Uncharacterized protein with a bacterial SH3 domain homologue
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21609; Mature: 21609
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKTLKMLIAGGAFALMAGYANAAMVATTASDISVRSGPGEDYPELGLATRGSNAVLDGC CCHHEEEEEECCHHHHHHCCCCEEEEEEECCCEEEECCCCCCCCCCCEEECCCCCEEHHH MEGSSWCRIEVNGLRGWAHADYLNVMYEGSPVILEQRRSDLSVPVVTYEKTASVQAEPNP CCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEECCCEEEECCCC GDPNLGRVGEVDPPQSVITYMDEHPAETVTYDGDIAVGSVLPADTRMVEVPDYQYRYVRV CCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCEEECEECCCCCEEEECCCCEEEEEEE NDVPVLVEPSTRRIVYVYQ CCEEEEECCCCCEEEEEEC >Mature Secondary Structure MDKTLKMLIAGGAFALMAGYANAAMVATTASDISVRSGPGEDYPELGLATRGSNAVLDGC CCHHEEEEEECCHHHHHHCCCCEEEEEEECCCEEEECCCCCCCCCCCEEECCCCCEEHHH MEGSSWCRIEVNGLRGWAHADYLNVMYEGSPVILEQRRSDLSVPVVTYEKTASVQAEPNP CCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEECCCEEEECCCC GDPNLGRVGEVDPPQSVITYMDEHPAETVTYDGDIAVGSVLPADTRMVEVPDYQYRYVRV CCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCEEECEECCCCCEEEECCCCEEEEEEE NDVPVLVEPSTRRIVYVYQ CCEEEEECCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA