| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is budC [H]
Identifier: 15889201
GI number: 15889201
Start: 1882667
End: 1883452
Strand: Direct
Name: budC [H]
Synonym: Atu1905
Alternate gene names: 15889201
Gene position: 1882667-1883452 (Clockwise)
Preceding gene: 159184972
Following gene: 15889207
Centisome position: 66.25
GC content: 60.94
Gene sequence:
>786_bases ATGAGGCGCTTTGAAGGTCAATCCGTATTCGTGACCGGGGGCAACAAGGGCATCGGTTACGGCATCGCCCGCCGTTTTGC CGAAGAAGGCGCGAAAGTCGCCATCGCCTCTGTCGACAAAGACACACATGACGCCGCTAAAAAACTGGCGGACGAAACCG GCACCGTCACCCATGGCGTCATCCTCGACGTTAGGGATGCGGCGGCGGTGCGTGACGCCTATGGCGCTGCGGAAGACGCG ATCGGCGCGCTTTCCATCTCCGTCCAGAACGCCGGCGTCATCACTATCTCAAAGATCGAGGATCTGACGCAAGAACAGTG GGATTTGAACCTCGACGTCAACACCAAGGGCGCGTTCCTCTGCTGCCAGGAGGCAATCCGTCGCTTCCGCGCAAGCGGCA CCAAGGGCCGCCTCGTCAACACCGCCTCCGGCCAAGCGCGTCAGGGCTTCATCTACACGCCGCATTATGCTGCGTCCAAA TTCGGCGTTATCGGCCTGACGCAAAGCCTCGCCAAGGAACTTGCACCTGAGGGCATCACCGTCAACGCCATCTGCCCCGG CATCATCCACACCGAAATGTGGGATTACAACGACCGCGTCTGGGGCCAGATGCTGGGCGAATACAAGCCCGGCGAGTTGA TGGCCGAATGGGTGCGCAACATCCCCATGCGTCGCGCCGGAACGCCCGCCGAAGTGGCGGCGCTGGTGGCATTTCTGGCA TCAGAGGATGCGGCCTATATCACGGCCCAGACGATCAACGTCGATGGCGGGTTGATCATGTCTTGA
Upstream 100 bases:
>100_bases GCTCCGCACCGGCGTCATCGACGTGCTCGTCACCGATAAATTCACCGCCGAACGACTGGTCGGCCAGGAAACATAGCCAA AATCCCATAAAGGAGGAGAC
Downstream 100 bases:
>100_bases GGCCTGTTTGGGAACTGAGCAGCACGCCCCAATCTCCCTCATCCCTATGCCTGTCACAGGGATCCAGCCAGCCCAAGTCC TTGGGCTGAAAGGAGTCTTC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: Acetoin(diacetyl) reductase; AR; Meso-2,3-butanediol dehydrogenase [H]
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MRRFEGQSVFVTGGNKGIGYGIARRFAEEGAKVAIASVDKDTHDAAKKLADETGTVTHGVILDVRDAAAVRDAYGAAEDA IGALSISVQNAGVITISKIEDLTQEQWDLNLDVNTKGAFLCCQEAIRRFRASGTKGRLVNTASGQARQGFIYTPHYAASK FGVIGLTQSLAKELAPEGITVNAICPGIIHTEMWDYNDRVWGQMLGEYKPGELMAEWVRNIPMRRAGTPAEVAALVAFLA SEDAAYITAQTINVDGGLIMS
Sequences:
>Translated_261_residues MRRFEGQSVFVTGGNKGIGYGIARRFAEEGAKVAIASVDKDTHDAAKKLADETGTVTHGVILDVRDAAAVRDAYGAAEDA IGALSISVQNAGVITISKIEDLTQEQWDLNLDVNTKGAFLCCQEAIRRFRASGTKGRLVNTASGQARQGFIYTPHYAASK FGVIGLTQSLAKELAPEGITVNAICPGIIHTEMWDYNDRVWGQMLGEYKPGELMAEWVRNIPMRRAGTPAEVAALVAFLA SEDAAYITAQTINVDGGLIMS >Mature_261_residues MRRFEGQSVFVTGGNKGIGYGIARRFAEEGAKVAIASVDKDTHDAAKKLADETGTVTHGVILDVRDAAAVRDAYGAAEDA IGALSISVQNAGVITISKIEDLTQEQWDLNLDVNTKGAFLCCQEAIRRFRASGTKGRLVNTASGQARQGFIYTPHYAASK FGVIGLTQSLAKELAPEGITVNAICPGIIHTEMWDYNDRVWGQMLGEYKPGELMAEWVRNIPMRRAGTPAEVAALVAFLA SEDAAYITAQTINVDGGLIMS
Specific function: Catalyzes the reversible reduction of (S)-acetoin to 2,3-butanediol in the presence of NADH [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=266, Percent_Identity=33.4586466165414, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=35.0597609561753, Blast_Score=121, Evalue=8e-28, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=32.046332046332, Blast_Score=118, Evalue=6e-27, Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=33.852140077821, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=30.4, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI40254992, Length=254, Percent_Identity=30.3149606299213, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=26.3565891472868, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=31.0756972111554, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4758504, Length=272, Percent_Identity=28.3088235294118, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=27.0588235294118, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=33.1521739130435, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI4503301, Length=257, Percent_Identity=30.7392996108949, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI40254986, Length=203, Percent_Identity=29.064039408867, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI40807363, Length=194, Percent_Identity=28.8659793814433, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=29.7979797979798, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=28.9473684210526, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI83715985, Length=272, Percent_Identity=26.8382352941176, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI126723191, Length=178, Percent_Identity=31.4606741573034, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI223718074, Length=196, Percent_Identity=31.6326530612245, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=28.936170212766, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=25.5208333333333, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI210032110, Length=200, Percent_Identity=23, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI87082100, Length=263, Percent_Identity=34.9809885931559, Blast_Score=140, Evalue=9e-35, Organism=Escherichia coli, GI1787335, Length=257, Percent_Identity=33.0739299610895, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1789378, Length=258, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=30.3501945525292, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI2367175, Length=258, Percent_Identity=35.2713178294574, Blast_Score=117, Evalue=8e-28, Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=31.8897637795276, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1788459, Length=262, Percent_Identity=32.4427480916031, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI2367365, Length=256, Percent_Identity=32.421875, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI1786812, Length=263, Percent_Identity=33.8403041825095, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=27.6264591439689, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=27.2373540856031, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787905, Length=258, Percent_Identity=26.7441860465116, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787526, Length=253, Percent_Identity=26.0869565217391, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=33.4661354581673, Blast_Score=124, Evalue=4e-29, Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=34.7490347490347, Blast_Score=124, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=33.2, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=32.4324324324324, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=32.046332046332, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17561402, Length=263, Percent_Identity=31.5589353612167, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=28.968253968254, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17544670, Length=273, Percent_Identity=27.8388278388278, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17561272, Length=243, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI72000259, Length=270, Percent_Identity=29.6296296296296, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI115534694, Length=255, Percent_Identity=29.8039215686275, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17560150, Length=283, Percent_Identity=28.6219081272085, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=29.2134831460674, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17564282, Length=196, Percent_Identity=29.0816326530612, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=27.4611398963731, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538182, Length=272, Percent_Identity=29.4117647058824, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560332, Length=278, Percent_Identity=28.4172661870504, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17562990, Length=276, Percent_Identity=27.536231884058, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17562906, Length=279, Percent_Identity=29.0322580645161, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17563726, Length=274, Percent_Identity=28.4671532846715, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17558628, Length=192, Percent_Identity=29.6875, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562904, Length=276, Percent_Identity=28.6231884057971, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17559104, Length=279, Percent_Identity=30.1075268817204, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193204405, Length=276, Percent_Identity=27.536231884058, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17531453, Length=278, Percent_Identity=30.2158273381295, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17538486, Length=277, Percent_Identity=29.6028880866426, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=26.8774703557312, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203115, Length=248, Percent_Identity=25.8064516129032, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203117, Length=247, Percent_Identity=25.9109311740891, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=27.8195488721804, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=27.4436090225564, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=29.9492385786802, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=25, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567345, Length=199, Percent_Identity=29.6482412060301, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17565030, Length=270, Percent_Identity=27.4074074074074, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562908, Length=272, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17560220, Length=274, Percent_Identity=25.5474452554745, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17508651, Length=262, Percent_Identity=28.2442748091603, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=260, Percent_Identity=27.6923076923077, Blast_Score=80, Evalue=5e-16, Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=33.5907335907336, Blast_Score=131, Evalue=5e-31, Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=32.156862745098, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=32.421875, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644339, Length=263, Percent_Identity=31.5589353612167, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI21357041, Length=265, Percent_Identity=29.0566037735849, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI28571526, Length=265, Percent_Identity=28.6792452830189, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=28.643216080402, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=30.46875, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI17737361, Length=264, Percent_Identity=29.9242424242424, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24644337, Length=255, Percent_Identity=27.843137254902, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=31.6062176165803, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24584752, Length=192, Percent_Identity=30.7291666666667, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI116007234, Length=245, Percent_Identity=28.9795918367347, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI116007236, Length=212, Percent_Identity=25, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28573296, Length=203, Percent_Identity=28.0788177339901, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI19921754, Length=215, Percent_Identity=26.046511627907, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI22024069, Length=201, Percent_Identity=27.363184079602, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014007 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.304 [H]
Molecular weight: Translated: 27968; Mature: 27968
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRFEGQSVFVTGGNKGIGYGIARRFAEEGAKVAIASVDKDTHDAAKKLADETGTVTHGV CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEE ILDVRDAAAVRDAYGAAEDAIGALSISVQNAGVITISKIEDLTQEQWDLNLDVNTKGAFL EEEEHHHHHHHHHHCCHHHCCEEEEEEECCCCEEEEHHHHHHHHHHCCEEEEECCCCHHH CCQEAIRRFRASGTKGRLVNTASGQARQGFIYTPHYAASKFGVIGLTQSLAKELAPEGIT HHHHHHHHHHCCCCCCCEEECCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCEE VNAICPGIIHTEMWDYNDRVWGQMLGEYKPGELMAEWVRNIPMRRAGTPAEVAALVAFLA EEEECCCHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH SEDAAYITAQTINVDGGLIMS CCCCEEEEEEEEECCCCEEEC >Mature Secondary Structure MRRFEGQSVFVTGGNKGIGYGIARRFAEEGAKVAIASVDKDTHDAAKKLADETGTVTHGV CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEE ILDVRDAAAVRDAYGAAEDAIGALSISVQNAGVITISKIEDLTQEQWDLNLDVNTKGAFL EEEEHHHHHHHHHHCCHHHCCEEEEEEECCCCEEEEHHHHHHHHHHCCEEEEECCCCHHH CCQEAIRRFRASGTKGRLVNTASGQARQGFIYTPHYAASKFGVIGLTQSLAKELAPEGIT HHHHHHHHHHCCCCCCCEEECCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCEE VNAICPGIIHTEMWDYNDRVWGQMLGEYKPGELMAEWVRNIPMRRAGTPAEVAALVAFLA EEEECCCHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH SEDAAYITAQTINVDGGLIMS CCCCEEEEEEEEECCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11173520 [H]