Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889153
Identifier: 15889153
GI number: 15889153
Start: 1832582
End: 1833730
Strand: Reverse
Name: 15889153
Synonym: Atu1852
Alternate gene names: NA
Gene position: 1833730-1832582 (Counterclockwise)
Preceding gene: 15889157
Following gene: 15889148
Centisome position: 64.53
GC content: 61.71
Gene sequence:
>1149_bases ATGCCGACCGTCAAGTCACGACTTGTTCTTTATTTCCCCGGTTTCGATCCGCTCGATGCGGCTGCCCATCATCTGCGCTA CCAGCGCGCCGCAGCGCTGGCGGGAAAGACGTGGGACGTCAATTATGCCGTGGGGCCGCGGGAGAGCAGGCCGGCTGGCG AAGCCTTCACGGTGGAGGCTTCGGCGGGAAATTGGAGCACGCGTTCGGATATCGTCGTCTATGACCATAACGATGTCATC TCGCAGCTGCGGGATGCGTCCGTGTGGCGGCAGATCTGGTTGGGTTTCAAGGCCGGGGCGGGCATCGTCAGTGAGGGCGG TGCGGCGCGTTATCTGCGCCATGCCTGGCGTTTTGGGCTGTTCTTCATCTTCCCGTTCCTGCTGATGCTTGCCGGCGGCG CGCTTGCTGCCGGCATTGCGCTCTCGCCATGGCTTTTCAGCCTGCCGCTCTGGCTTCTGGTGGTCAGCATTCCCGCTGCG GCCCTGTTTTTCGTGAAGGCGTTCCTGCCTTTCGCGGAGCGATTTCACACTTTGCATCTTTATGCGGATTGGCGTTTCGC GCTCGCGGTCGGCCGCAATGAACCTATTGCCCGTGACTGGATCGAGGAGAGGGCGGCACTTGTGGTGACGGCGCTTGAAG AGCCCTCGGATGAGGTTCTGGTGGTGTCGCACAGCATGGGTGCCAGCCTCGCGCTCGCGGTCATCGGCCGTGTGCTGGAG CTGAAACCCGACGCGCTGGATGGCCGCAAGCTGTCTTTCGCGACGTTGGGCGGTGCCGCGCTGCAATGTGCGTTCCTGTC GAGTGCGGAGAGGCTTCGCGAGAGCATCGGCGCAATCGCGCGTCATCCTGATGTGACATGGTTCGACATCCAGTGCCTGA CCGATCCCATCCACCTCTACCGGTGCAACACCGTCGCTTTGACCGGCCACAAAGACGCGCCGCAGCCGAAGATCGTGCCG ATCCGTTTCAAGCATTCGCTCTCACCGGAGCGCTACAAAAAGAACAAGCGCAATTTTCTGCGCATGCACCGGCAATATGT TCTCGGGCCGGATCGCAGATCCGGTTACGATTTCACCCTTTTGACGGCGGGGCCCCTGCCGGCCGCATCCTTTGCCGATC TGGAATCGCAGAGCCCGCCTGCTTTGTAA
Upstream 100 bases:
>100_bases CCACCAAATAAATCATATTTCCGTCGCGATTTTTACTATACGTGCATCGCCCACTGTATCAAGCGATCCTTTCGGGTGTC TCCAGCCTGAAGGTTTATGC
Downstream 100 bases:
>100_bases GCGGCGTTATCCCTTCTGCCTGACATGAAAAGGCCCGCGTGAGAGCATCACGCGGGCCTTTGATTTAGTCCGGGGCCTTT ATGCGTCGGCGGGACAGTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 382; Mature: 381
Protein sequence:
>382_residues MPTVKSRLVLYFPGFDPLDAAAHHLRYQRAAALAGKTWDVNYAVGPRESRPAGEAFTVEASAGNWSTRSDIVVYDHNDVI SQLRDASVWRQIWLGFKAGAGIVSEGGAARYLRHAWRFGLFFIFPFLLMLAGGALAAGIALSPWLFSLPLWLLVVSIPAA ALFFVKAFLPFAERFHTLHLYADWRFALAVGRNEPIARDWIEERAALVVTALEEPSDEVLVVSHSMGASLALAVIGRVLE LKPDALDGRKLSFATLGGAALQCAFLSSAERLRESIGAIARHPDVTWFDIQCLTDPIHLYRCNTVALTGHKDAPQPKIVP IRFKHSLSPERYKKNKRNFLRMHRQYVLGPDRRSGYDFTLLTAGPLPAASFADLESQSPPAL
Sequences:
>Translated_382_residues MPTVKSRLVLYFPGFDPLDAAAHHLRYQRAAALAGKTWDVNYAVGPRESRPAGEAFTVEASAGNWSTRSDIVVYDHNDVI SQLRDASVWRQIWLGFKAGAGIVSEGGAARYLRHAWRFGLFFIFPFLLMLAGGALAAGIALSPWLFSLPLWLLVVSIPAA ALFFVKAFLPFAERFHTLHLYADWRFALAVGRNEPIARDWIEERAALVVTALEEPSDEVLVVSHSMGASLALAVIGRVLE LKPDALDGRKLSFATLGGAALQCAFLSSAERLRESIGAIARHPDVTWFDIQCLTDPIHLYRCNTVALTGHKDAPQPKIVP IRFKHSLSPERYKKNKRNFLRMHRQYVLGPDRRSGYDFTLLTAGPLPAASFADLESQSPPAL >Mature_381_residues PTVKSRLVLYFPGFDPLDAAAHHLRYQRAAALAGKTWDVNYAVGPRESRPAGEAFTVEASAGNWSTRSDIVVYDHNDVIS QLRDASVWRQIWLGFKAGAGIVSEGGAARYLRHAWRFGLFFIFPFLLMLAGGALAAGIALSPWLFSLPLWLLVVSIPAAA LFFVKAFLPFAERFHTLHLYADWRFALAVGRNEPIARDWIEERAALVVTALEEPSDEVLVVSHSMGASLALAVIGRVLEL KPDALDGRKLSFATLGGAALQCAFLSSAERLRESIGAIARHPDVTWFDIQCLTDPIHLYRCNTVALTGHKDAPQPKIVPI RFKHSLSPERYKKNKRNFLRMHRQYVLGPDRRSGYDFTLLTAGPLPAASFADLESQSPPAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42257; Mature: 42126
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTVKSRLVLYFPGFDPLDAAAHHLRYQRAAALAGKTWDVNYAVGPRESRPAGEAFTVEA CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEE SAGNWSTRSDIVVYDHNDVISQLRDASVWRQIWLGFKAGAGIVSEGGAARYLRHAWRFGL CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHH FFIFPFLLMLAGGALAAGIALSPWLFSLPLWLLVVSIPAAALFFVKAFLPFAERFHTLHL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE YADWRFALAVGRNEPIARDWIEERAALVVTALEEPSDEVLVVSHSMGASLALAVIGRVLE EEEEEEEEEECCCCCHHHHHHHHHHEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHH LKPDALDGRKLSFATLGGAALQCAFLSSAERLRESIGAIARHPDVTWFDIQCLTDPIHLY CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEE RCNTVALTGHKDAPQPKIVPIRFKHSLSPERYKKNKRNFLRMHRQYVLGPDRRSGYDFTL EEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE LTAGPLPAASFADLESQSPPAL EECCCCCCCHHHCCCCCCCCCC >Mature Secondary Structure PTVKSRLVLYFPGFDPLDAAAHHLRYQRAAALAGKTWDVNYAVGPRESRPAGEAFTVEA CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEE SAGNWSTRSDIVVYDHNDVISQLRDASVWRQIWLGFKAGAGIVSEGGAARYLRHAWRFGL CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHH FFIFPFLLMLAGGALAAGIALSPWLFSLPLWLLVVSIPAAALFFVKAFLPFAERFHTLHL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE YADWRFALAVGRNEPIARDWIEERAALVVTALEEPSDEVLVVSHSMGASLALAVIGRVLE EEEEEEEEEECCCCCHHHHHHHHHHEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHH LKPDALDGRKLSFATLGGAALQCAFLSSAERLRESIGAIARHPDVTWFDIQCLTDPIHLY CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEE RCNTVALTGHKDAPQPKIVPIRFKHSLSPERYKKNKRNFLRMHRQYVLGPDRRSGYDFTL EEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE LTAGPLPAASFADLESQSPPAL EECCCCCCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA