Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is dhs [H]
Identifier: 15888923
GI number: 15888923
Start: 1591996
End: 1593372
Strand: Reverse
Name: dhs [H]
Synonym: Atu1610
Alternate gene names: 15888923
Gene position: 1593372-1591996 (Counterclockwise)
Preceding gene: 159184837
Following gene: 15888916
Centisome position: 56.07
GC content: 61.44
Gene sequence:
>1377_bases ATGGCACAGAATTGGACCCCCGGCAGCTGGCGGCAGAAACCGATCCAGCAGGTTCCCGAATATCCTGATGCGGCCGCACT TGCGGCTACCGAAGCCACGCTTGCGACCTATCCGCCGCTGGTTTTTGCCGGTGAAGCCCGTCGCCTCAAAAAACAGCTCG CCAATGTGGCGGAAGGCAACGCCTTCCTGCTGCAGGGTGGCGACTGCGCCGAAAGCTTCCTCGAGCATGGCGCCGACAAT ATCCGCGACTTCTTCCGCGCTTTCCTGCAGATGGCCGTGGTGCTGACCTATGGCGCACAGCTGCCGGTGGTTAAGGTCGG TCGCATTGCCGGCCAGTTCGCCAAGCCGCGCTCTTCCAACGTGGAAGTGCTCGATGGCGTGACGCTGCCGTCCTACCGCG GTGACATCATCAACGGTATCGAATTCAACGAGGCCTCGCGCATTCCGAGCCCGGAGCGCCAGCTCGACGCCTATCGCCAG TCGGCCGCGACGCTTAACCTGCTGCGCGCTTTCGCGATGGGCGGTTACGCCAACCTTGAAAACGTCCACCAGTGGATGCT CGGTTTCATCAAGGACAGCCCGCAGGCGGACCGCTACCGCAAGCTGGCCGACCGCATTTCCGAAACCATGAACTTCATGC AGGCGATCGGCATCAGCGCGGAAAACAATCCGAGCCTGCGCGAGACCGATTTCTTCACCAGCCATGAAGCGTTGCTGCTT GGTTACGAAGAAGCGCTGACCCGTATCGATTCCACCTCGGGCGACTGGTACGCGACGTCGGGTCACATGATCTGGATCGG TGACCGCACGCGTCAGCTCGACCATGCGCATGTGGAATATTTCCGCGGCATCAAGAATCCGATCGGCCTGAAGTGCGGTC CGTCGCTGACGCCTGACAATCTGATCGAGCTGATCGATGCACTGAACCCGGCAAACGAAGCCGGGCGCCTGACGCTGATC TGCCGTTTCGGCCATGACAAGGTGGCGGACAGCCTGCCGAAGCTCATCCGTGCGGTGGAGAAAGAAGGCCGTAAGGTTGT CTGGTCCTGCGATCCGATGCATGGCAATACGATCACGCTCAACCACTACAAGACGCGTCCGTTCGAGCGCATCCTGTCGG AAGTCGAAAGCTTCTTCCAGATCCATCGCGCCGAAGGCACGCATCCGGGCGGCATCCACATCGAGATGACCGGCAAGGAC GTGACGGAATGCACGGGTGGCGCGCGCGCCGTGACGGCGGATTCGCTGTCCGACCGTTACCACACCCATTGCGATCCGCG CCTCAACGCCGATCAGGCGCTGGAACTGGCGTTCCTGCTGTCCGAGCGTATGAAGAGCGGTCGCGACGAAAAGCGTCTGG CAATCGCCAACGCCTGA
Upstream 100 bases:
>100_bases CCCGACATCGGCTATGCAAAGCCGATGCTTGGAGCTATAAGCCGCTCAATTTTTCGAGGCGGTCGCGCGGCAGTCGCGCG GGCGAAAAAAGGGTAAGAAC
Downstream 100 bases:
>100_bases TATCAGGGCTGATCAAATGAAAAGCCGCCGGGATCTCTCCCGGCGGCTTTTTTATGGGCGGTGACGGGATTATTGCACCA GTGCCGGCTGCTGGCAGCGA
Product: 2-dehydro-3-deoxyphosphoheptonate aldolase
Products: NA
Alternate protein names: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; DAHP synthase; Phospho-2-keto-3-deoxyheptonate aldolase [H]
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MAQNWTPGSWRQKPIQQVPEYPDAAALAATEATLATYPPLVFAGEARRLKKQLANVAEGNAFLLQGGDCAESFLEHGADN IRDFFRAFLQMAVVLTYGAQLPVVKVGRIAGQFAKPRSSNVEVLDGVTLPSYRGDIINGIEFNEASRIPSPERQLDAYRQ SAATLNLLRAFAMGGYANLENVHQWMLGFIKDSPQADRYRKLADRISETMNFMQAIGISAENNPSLRETDFFTSHEALLL GYEEALTRIDSTSGDWYATSGHMIWIGDRTRQLDHAHVEYFRGIKNPIGLKCGPSLTPDNLIELIDALNPANEAGRLTLI CRFGHDKVADSLPKLIRAVEKEGRKVVWSCDPMHGNTITLNHYKTRPFERILSEVESFFQIHRAEGTHPGGIHIEMTGKD VTECTGGARAVTADSLSDRYHTHCDPRLNADQALELAFLLSERMKSGRDEKRLAIANA
Sequences:
>Translated_458_residues MAQNWTPGSWRQKPIQQVPEYPDAAALAATEATLATYPPLVFAGEARRLKKQLANVAEGNAFLLQGGDCAESFLEHGADN IRDFFRAFLQMAVVLTYGAQLPVVKVGRIAGQFAKPRSSNVEVLDGVTLPSYRGDIINGIEFNEASRIPSPERQLDAYRQ SAATLNLLRAFAMGGYANLENVHQWMLGFIKDSPQADRYRKLADRISETMNFMQAIGISAENNPSLRETDFFTSHEALLL GYEEALTRIDSTSGDWYATSGHMIWIGDRTRQLDHAHVEYFRGIKNPIGLKCGPSLTPDNLIELIDALNPANEAGRLTLI CRFGHDKVADSLPKLIRAVEKEGRKVVWSCDPMHGNTITLNHYKTRPFERILSEVESFFQIHRAEGTHPGGIHIEMTGKD VTECTGGARAVTADSLSDRYHTHCDPRLNADQALELAFLLSERMKSGRDEKRLAIANA >Mature_457_residues AQNWTPGSWRQKPIQQVPEYPDAAALAATEATLATYPPLVFAGEARRLKKQLANVAEGNAFLLQGGDCAESFLEHGADNI RDFFRAFLQMAVVLTYGAQLPVVKVGRIAGQFAKPRSSNVEVLDGVTLPSYRGDIINGIEFNEASRIPSPERQLDAYRQS AATLNLLRAFAMGGYANLENVHQWMLGFIKDSPQADRYRKLADRISETMNFMQAIGISAENNPSLRETDFFTSHEALLLG YEEALTRIDSTSGDWYATSGHMIWIGDRTRQLDHAHVEYFRGIKNPIGLKCGPSLTPDNLIELIDALNPANEAGRLTLIC RFGHDKVADSLPKLIRAVEKEGRKVVWSCDPMHGNTITLNHYKTRPFERILSEVESFFQIHRAEGTHPGGIHIEMTGKDV TECTGGARAVTADSLSDRYHTHCDPRLNADQALELAFLLSERMKSGRDEKRLAIANA
Specific function: Unknown
COG id: COG3200
COG function: function code E; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II DAHP synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002480 [H]
Pfam domain/function: PF01474 DAHP_synth_2 [H]
EC number: =2.5.1.54 [H]
Molecular weight: Translated: 50882; Mature: 50751
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQNWTPGSWRQKPIQQVPEYPDAAALAATEATLATYPPLVFAGEARRLKKQLANVAEGN CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCC AFLLQGGDCAESFLEHGADNIRDFFRAFLQMAVVLTYGAQLPVVKVGRIAGQFAKPRSSN EEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC VEVLDGVTLPSYRGDIINGIEFNEASRIPSPERQLDAYRQSAATLNLLRAFAMGGYANLE CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH NVHQWMLGFIKDSPQADRYRKLADRISETMNFMQAIGISAENNPSLRETDFFTSHEALLL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEE GYEEALTRIDSTSGDWYATSGHMIWIGDRTRQLDHAHVEYFRGIKNPIGLKCGPSLTPDN EHHHHHHHHCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH LIELIDALNPANEAGRLTLICRFGHDKVADSLPKLIRAVEKEGRKVVWSCDPMHGNTITL HHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEE NHYKTRPFERILSEVESFFQIHRAEGTHPGGIHIEMTGKDVTECTGGARAVTADSLSDRY CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHCCCCCEEEHHHHHHHH HTHCDPRLNADQALELAFLLSERMKSGRDEKRLAIANA CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCC >Mature Secondary Structure AQNWTPGSWRQKPIQQVPEYPDAAALAATEATLATYPPLVFAGEARRLKKQLANVAEGN CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCC AFLLQGGDCAESFLEHGADNIRDFFRAFLQMAVVLTYGAQLPVVKVGRIAGQFAKPRSSN EEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC VEVLDGVTLPSYRGDIINGIEFNEASRIPSPERQLDAYRQSAATLNLLRAFAMGGYANLE CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH NVHQWMLGFIKDSPQADRYRKLADRISETMNFMQAIGISAENNPSLRETDFFTSHEALLL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEE GYEEALTRIDSTSGDWYATSGHMIWIGDRTRQLDHAHVEYFRGIKNPIGLKCGPSLTPDN EHHHHHHHHCCCCCCEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH LIELIDALNPANEAGRLTLICRFGHDKVADSLPKLIRAVEKEGRKVVWSCDPMHGNTITL HHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEE NHYKTRPFERILSEVESFFQIHRAEGTHPGGIHIEMTGKDVTECTGGARAVTADSLSDRY CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHCCCCCEEEHHHHHHHH HTHCDPRLNADQALELAFLLSERMKSGRDEKRLAIANA CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953; 8760910 [H]