Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yfjG [H]
Identifier: 15888766
GI number: 15888766
Start: 1434734
End: 1435189
Strand: Direct
Name: yfjG [H]
Synonym: Atu1441
Alternate gene names: 15888766
Gene position: 1434734-1435189 (Clockwise)
Preceding gene: 15888765
Following gene: 15888769
Centisome position: 50.49
GC content: 57.02
Gene sequence:
>456_bases ATGCCACAGTTCGAAACGCATCGCCTTGTTAAACACTCGCCCGACCGCATGTACGACCTCGTCGCCGATGTGGAGAAATA TCCGCAGTTTCTACCGCTTTGCGAGGCGCTCTCCGTCCGCTCGCGCAAGGAACGGGATGGCAAGGTGCTGCTGGTGGCCG ATATGACAGTCGGTTACAAGGCCATTCGCGAGACCTTCACCACGCAGGTCCTATTGAACCCGGCCGAGCGCGCCATTGAC GTGAAATATATCGACGGCCCCTTCAGGTATCTCGACAATCGCTGGCGTTTCGAAGCCGCCGAAAATGGTGGCACGACGAT TCATTTCTTCATCGATTATGAATTCAAGAACCGCCTGCTTGGCGCGGTGATGGGCTCGATGTTCGACCGGGCGTTCCGCA TGTTTGCGGAAGCCTTCGAGACCCGTGCCGACAAAATTTACACCGACCCGGCCTGA
Upstream 100 bases:
>100_bases TGCGCTTCATGGCCCCAACGTGCCGATATTCCAGCTGAAAAGCCGAAAACAGATCCGCCGCCTTCTTGATCTTCTTGTTG TCGAGGATTAACTGCCGTTC
Downstream 100 bases:
>100_bases TTGAGGGCAATTAGCATCTCAAGCGCGGTCCTGACCGTCGCAAGCCGGATTTCAGTACGGCCGATATCTCCGTAACGCAT TTCGTGATGCAGGACGTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 151; Mature: 150
Protein sequence:
>151_residues MPQFETHRLVKHSPDRMYDLVADVEKYPQFLPLCEALSVRSRKERDGKVLLVADMTVGYKAIRETFTTQVLLNPAERAID VKYIDGPFRYLDNRWRFEAAENGGTTIHFFIDYEFKNRLLGAVMGSMFDRAFRMFAEAFETRADKIYTDPA
Sequences:
>Translated_151_residues MPQFETHRLVKHSPDRMYDLVADVEKYPQFLPLCEALSVRSRKERDGKVLLVADMTVGYKAIRETFTTQVLLNPAERAID VKYIDGPFRYLDNRWRFEAAENGGTTIHFFIDYEFKNRLLGAVMGSMFDRAFRMFAEAFETRADKIYTDPA >Mature_150_residues PQFETHRLVKHSPDRMYDLVADVEKYPQFLPLCEALSVRSRKERDGKVLLVADMTVGYKAIRETFTTQVLLNPAERAIDV KYIDGPFRYLDNRWRFEAAENGGTTIHFFIDYEFKNRLLGAVMGSMFDRAFRMFAEAFETRADKIYTDPA
Specific function: Unknown
COG id: COG2867
COG function: function code I; Oligoketide cyclase/lipid transport protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0083 family [H]
Homologues:
Organism=Homo sapiens, GI13376737, Length=150, Percent_Identity=30, Blast_Score=66, Evalue=9e-12, Organism=Escherichia coli, GI1788972, Length=148, Percent_Identity=34.4594594594595, Blast_Score=93, Evalue=9e-21, Organism=Caenorhabditis elegans, GI115532702, Length=147, Percent_Identity=27.2108843537415, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005031 [H]
Pfam domain/function: PF03364 Polyketide_cyc [H]
EC number: NA
Molecular weight: Translated: 17629; Mature: 17498
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQFETHRLVKHSPDRMYDLVADVEKYPQFLPLCEALSVRSRKERDGKVLLVADMTVGYK CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH AIRETFTTQVLLNPAERAIDVKYIDGPFRYLDNRWRFEAAENGGTTIHFFIDYEFKNRLL HHHHHHHHHHEECCHHHEEEEEEECCHHHHHCCCEEEEEECCCCCEEEEEEEEHHHHHHH GAVMGSMFDRAFRMFAEAFETRADKIYTDPA HHHHHHHHHHHHHHHHHHHHHHHCCEECCCC >Mature Secondary Structure PQFETHRLVKHSPDRMYDLVADVEKYPQFLPLCEALSVRSRKERDGKVLLVADMTVGYK CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHH AIRETFTTQVLLNPAERAIDVKYIDGPFRYLDNRWRFEAAENGGTTIHFFIDYEFKNRLL HHHHHHHHHHEECCHHHEEEEEEECCHHHHHCCCEEEEEECCCCCEEEEEEEEHHHHHHH GAVMGSMFDRAFRMFAEAFETRADKIYTDPA HHHHHHHHHHHHHHHHHHHHHHHCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7524073; 9205837; 9278503 [H]