Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888677
Identifier: 15888677
GI number: 15888677
Start: 1345934
End: 1346560
Strand: Reverse
Name: 15888677
Synonym: Atu1351
Alternate gene names: NA
Gene position: 1346560-1345934 (Counterclockwise)
Preceding gene: 15888681
Following gene: 159184723
Centisome position: 47.39
GC content: 58.85
Gene sequence:
>627_bases ATGACCAAATCATCAAGCGCTCTCTGCGCCGTTTTCGCAGGCGCATTGGCCCTTTCCCTGTCCGGACCGGCTTTTGCCGA AACCATCGTCCGCAAGACCTATTCCTATTTTTCGGTCAGCGGCAAAACCGCAGCCGATCTTGACCAGCAGCTTTCCAAGC ACGGCCCGCTGACCCGCAATACCGGCGCGCGCCATCCCGGTGCGACCGAAATCAAATTCGGCGGTGAGCTCACCTATGTC GAAAAAAACGGCATGTGCAGCGTCGGCACGGCCAAGGTGCTCCTGAATACTCGCATTCTGCTGCCGCAGTGGAAAAACCG CCGCCGCACCACGGCGGAACTGGCCTTCATCTGGGATACCCTGCTTGCCGACATCAAGCGCCATGAGGAACGCCACGCGG AAATAGCCCGTACCCATGCCCGTTCGCTCGAAAGACAATTGACGTCGCTTCGTCCGCAGAAAAGCTGTGAAGTGCTGCAG GGAATGGTCGGCAAGATCACCCAGACAGTGATGGACGAGCACGATCGCGACCAGATGCGCTTCGACGTGGTGGAATCGAA AAACTTCGATGCCCGCATGACCCGGCTGTTAAAAAACCGGCTGGAACAGGGCCAGGCCCGCCGCTGA
Upstream 100 bases:
>100_bases CACGCGCCTTTCGGGAATAACGGAGTGTTATGTCAATTCTTATAAGTTCCGCTCCGCCTATGCAGCAAACCTTTTTCAAG TTCAACCGGAAGGCCGGGTC
Downstream 100 bases:
>100_bases CGGTTGTTGGCAGCCCTTCCCAAATCTCGAGGAACAACAGGGACATGACGTAACGTCATGTCCGATATCACCCGTGAATT CTCGTCATGGTGCGGCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MTKSSSALCAVFAGALALSLSGPAFAETIVRKTYSYFSVSGKTAADLDQQLSKHGPLTRNTGARHPGATEIKFGGELTYV EKNGMCSVGTAKVLLNTRILLPQWKNRRRTTAELAFIWDTLLADIKRHEERHAEIARTHARSLERQLTSLRPQKSCEVLQ GMVGKITQTVMDEHDRDQMRFDVVESKNFDARMTRLLKNRLEQGQARR
Sequences:
>Translated_208_residues MTKSSSALCAVFAGALALSLSGPAFAETIVRKTYSYFSVSGKTAADLDQQLSKHGPLTRNTGARHPGATEIKFGGELTYV EKNGMCSVGTAKVLLNTRILLPQWKNRRRTTAELAFIWDTLLADIKRHEERHAEIARTHARSLERQLTSLRPQKSCEVLQ GMVGKITQTVMDEHDRDQMRFDVVESKNFDARMTRLLKNRLEQGQARR >Mature_207_residues TKSSSALCAVFAGALALSLSGPAFAETIVRKTYSYFSVSGKTAADLDQQLSKHGPLTRNTGARHPGATEIKFGGELTYVE KNGMCSVGTAKVLLNTRILLPQWKNRRRTTAELAFIWDTLLADIKRHEERHAEIARTHARSLERQLTSLRPQKSCEVLQG MVGKITQTVMDEHDRDQMRFDVVESKNFDARMTRLLKNRLEQGQARR
Specific function: Unknown
COG id: COG5661
COG function: function code O; Predicted secreted Zn-dependent protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23360; Mature: 23229
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKSSSALCAVFAGALALSLSGPAFAETIVRKTYSYFSVSGKTAADLDQQLSKHGPLTRN CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC TGARHPGATEIKFGGELTYVEKNGMCSVGTAKVLLNTRILLPQWKNRRRTTAELAFIWDT CCCCCCCCCEEEECCEEEEEECCCCCCCCHHHHHHHHHEECCCCCCCCHHHHHHHHHHHH LLADIKRHEERHAEIARTHARSLERQLTSLRPQKSCEVLQGMVGKITQTVMDEHDRDQMR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH FDVVESKNFDARMTRLLKNRLEQGQARR HHHHHCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TKSSSALCAVFAGALALSLSGPAFAETIVRKTYSYFSVSGKTAADLDQQLSKHGPLTRN CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC TGARHPGATEIKFGGELTYVEKNGMCSVGTAKVLLNTRILLPQWKNRRRTTAELAFIWDT CCCCCCCCCEEEECCEEEEEECCCCCCCCHHHHHHHHHEECCCCCCCCHHHHHHHHHHHH LLADIKRHEERHAEIARTHARSLERQLTSLRPQKSCEVLQGMVGKITQTVMDEHDRDQMR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH FDVVESKNFDARMTRLLKNRLEQGQARR HHHHHCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA