| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is mrcA [H]
Identifier: 15888667
GI number: 15888667
Start: 1328956
End: 1331403
Strand: Direct
Name: mrcA [H]
Synonym: Atu1341
Alternate gene names: 15888667
Gene position: 1328956-1331403 (Clockwise)
Preceding gene: 159184720
Following gene: 15888668
Centisome position: 46.77
GC content: 60.5
Gene sequence:
>2448_bases ATGATCAGACTGATTGGATATTTTTTCGGCTTGGCCAGCGTGCTCTTTCTGTGCGCTGCCGTCGTCGGTGCGATTTATTT GCACGGCGTGACGAAGGACCTGCCGGATTATGCAGTTCTGAGCACGTATGAACCGCCGGTAACGACCCGTGTGCACGCCG GCAACGGTGCTCTGATGGCAGAATATGCCCATGAAAAGCGCCTTTTCCTGCCCATCCAGGCAATTCCCGACCGCGTGAAG GCCGCCTTCCTGTCCGCCGAAGACAAGAATTTCTACAATCACCCCGGTGTCGATATCTGGGGTCTCGGTCGCGCCATTCT CGTCAATCTCCAGAATCTGGGCTCTGGCCGCCGCCCGGTCGGCGCTTCCACCATCACCCAGCAGGTTGCGAAGAACTTCC TTCTGACAAACGATCAGACCATCGACCGCAAGCTCAAGGAAGCCATTCTTTCCTTCCGCATCGAGCAGACCTATTCGAAG GACAAGATCCTCGAACTTTATCTCAACGAGATCTTTTTCGGCCTGAATTCTTACGGCATCGCCGGCGCGGCGCTCACCTA TTTCAACAAATCGGTGACGGAACTGACTATCGCCGAGACCGCCTATCTCGCATCGCTGCCGAAAGGCCCGGCCAATTACC ATCCGATCCGTCGCGAAAAAGCAGCGCTGGAGCGCCGCGACTGGGTGATCGACCGTATGGCCGAGAACGGCTATATCACC GTTGCCGACGCCACCGATGCCAAAAAGCAGCCGCTCGGCGTCAATCTGCGTCGCGGCGGCGCCCATATTGCCGCATCCGA TTATTTCGCCGAGGAAGTCCGCCGCCAGATCGTCGAGAAATATGGCGAAGAAGCGCTTCTCGAAGGCGGGCTCTCTGTTC GCACCTCTTTTGATCCGCAGATCCAGATGGAGGCGCGCAAGGCGCTTCAGGATGGGCTTGTGCAATATGACGAACGCCGC GGTTTCCGTGGGCCGATCGAAAAGATCGAGACGGCCGGCGACTGGACGGCGGCGCTGGCCAAGGTCAAGGGTCTCCGGGA CGTTCCCGAATGGAAGGTTGCCGTCGTACTCGCCGTTGCCGCCGATGGCGTCGATATCGGTGTCCAGGCCGACCCGGATG CGGAAGATGGCGACAAGCGCACGCGCGGCCATATCTCGGCTGAAAACATGCGCTGGGCATTCCGTGACGCCAGCGGCAAG AAAGCGACATCCAAGTCGCCGGTCGGCGTTGTGACGGCGGGCGACGTCGTCTATGCGCAGCCGCTTTCCGGCTCTGGCAA CGAATACCGTCTGCGTCAGCCGCCGAAAGTGCAGGGTGGCATGGTGGTGATGGACCCGCATACCGGCCGCGTTCTGGCCA TGGTCGGCGGCTTCTCCTACGCGCAGTCGGAATTCAACCGCTCCACGCAGGCCATGCGCCAGCCGGGTTCGTCCTTCAAG CCGTTCATCTATGCGGCCGCGCTCGACAATGGCTACACGCCGGCATCGGTCATTCTCGATGCACCGATCGAAGTCGTGTC GGGCGGTCAGGTCTGGAAACCGCAGAATTACGGCGGGGGTTCCGCGGGTCCGTCGACGTTGCGTCTCGGCATCGAAAAAT CCCGTAACCTGATGACCGTGCGCCTGGCGCAGGACATGGGCATGAACCTTGTGGCGGAATATGCCGAACGCTTCGGCATC TACGACAAGATGCCGCCGCTTTTGTCCATGTCGCTCGGTTCGGGTGAAACCACTGTCATGCGTATGGTCTCGGCCTACTC GGTCCTTGCCAATGGCGGCAAGCAGATCAAGCCGACGCTGATCGACCGCATTCAGGACCGTTACGGCAAGACGATCTTCC GGCACGAGGAGCGCGGCTGCGAGGGCTGCAATGCGACGAGCTGGCAGAACCAGGACGAGCCCGTCATCGTTGACAATCGT GAGCAGGTTCTCGATCCGATGACTGCCTACCAGACGACGTCCATGCTGGAAGGCGTGGTGAAGCGCGGTACGGCGGCGGG CAAGATCAAGGTCGATCTGCCTGTTGCCGGCAAGACGGGCACGACCAATGATGAAAAGGACGCCTGGTTTGTCGGTTATA CGCCCGACATGGTCGCCGGCCTCTATATCGGTTTCGACTCGCCGGCACCGCTCGGTCGCGGCGGCACCGGTGGCTCGCTG TCAGCGCCGATCTTCGGTGAATTCATCGCCGATGCGGCCAAGCATCTGGAGCCGAGCAAGTTCATCGTGCCTGCTGGCAT GAACTTCGTCGCCGTCAACCGCAAGACAGGCATGGCGGCGGCTGAAGGCGAACCGGACACGATCATGGAAGCGTTCAAAC CCGGCACGGGTCCGGCTTCCACCTTCTCGGTGATTGGTGCTGAAGGCTACATGTCGCAGGAAGACATTCTGAAGACGTCG CCGCAGGCACAGCAGGCCATCACTGGCGGTGGCGGCGGTCTTTATTGA
Upstream 100 bases:
>100_bases CATCGAAGGTATGGTGTGCAAAACGGCACGCGATATGCAAGGATGCGCCCGTATTTCGTCGGGCGTTGATGGTTACGATT CGAATTATCGGTAGCTTGGT
Downstream 100 bases:
>100_bases CATCAGTCATGACGTTTGGCGGGGGCGCGGGTCTTTACATCCGCGCCCCCCGCATTTATTTGAGCTACAAGTTTCAATGA AGGTGAAGAACCAGCGAAAT
Product: penicillin-binding protein 1a
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 815; Mature: 815
Protein sequence:
>815_residues MIRLIGYFFGLASVLFLCAAVVGAIYLHGVTKDLPDYAVLSTYEPPVTTRVHAGNGALMAEYAHEKRLFLPIQAIPDRVK AAFLSAEDKNFYNHPGVDIWGLGRAILVNLQNLGSGRRPVGASTITQQVAKNFLLTNDQTIDRKLKEAILSFRIEQTYSK DKILELYLNEIFFGLNSYGIAGAALTYFNKSVTELTIAETAYLASLPKGPANYHPIRREKAALERRDWVIDRMAENGYIT VADATDAKKQPLGVNLRRGGAHIAASDYFAEEVRRQIVEKYGEEALLEGGLSVRTSFDPQIQMEARKALQDGLVQYDERR GFRGPIEKIETAGDWTAALAKVKGLRDVPEWKVAVVLAVAADGVDIGVQADPDAEDGDKRTRGHISAENMRWAFRDASGK KATSKSPVGVVTAGDVVYAQPLSGSGNEYRLRQPPKVQGGMVVMDPHTGRVLAMVGGFSYAQSEFNRSTQAMRQPGSSFK PFIYAAALDNGYTPASVILDAPIEVVSGGQVWKPQNYGGGSAGPSTLRLGIEKSRNLMTVRLAQDMGMNLVAEYAERFGI YDKMPPLLSMSLGSGETTVMRMVSAYSVLANGGKQIKPTLIDRIQDRYGKTIFRHEERGCEGCNATSWQNQDEPVIVDNR EQVLDPMTAYQTTSMLEGVVKRGTAAGKIKVDLPVAGKTGTTNDEKDAWFVGYTPDMVAGLYIGFDSPAPLGRGGTGGSL SAPIFGEFIADAAKHLEPSKFIVPAGMNFVAVNRKTGMAAAEGEPDTIMEAFKPGTGPASTFSVIGAEGYMSQEDILKTS PQAQQAITGGGGGLY
Sequences:
>Translated_815_residues MIRLIGYFFGLASVLFLCAAVVGAIYLHGVTKDLPDYAVLSTYEPPVTTRVHAGNGALMAEYAHEKRLFLPIQAIPDRVK AAFLSAEDKNFYNHPGVDIWGLGRAILVNLQNLGSGRRPVGASTITQQVAKNFLLTNDQTIDRKLKEAILSFRIEQTYSK DKILELYLNEIFFGLNSYGIAGAALTYFNKSVTELTIAETAYLASLPKGPANYHPIRREKAALERRDWVIDRMAENGYIT VADATDAKKQPLGVNLRRGGAHIAASDYFAEEVRRQIVEKYGEEALLEGGLSVRTSFDPQIQMEARKALQDGLVQYDERR GFRGPIEKIETAGDWTAALAKVKGLRDVPEWKVAVVLAVAADGVDIGVQADPDAEDGDKRTRGHISAENMRWAFRDASGK KATSKSPVGVVTAGDVVYAQPLSGSGNEYRLRQPPKVQGGMVVMDPHTGRVLAMVGGFSYAQSEFNRSTQAMRQPGSSFK PFIYAAALDNGYTPASVILDAPIEVVSGGQVWKPQNYGGGSAGPSTLRLGIEKSRNLMTVRLAQDMGMNLVAEYAERFGI YDKMPPLLSMSLGSGETTVMRMVSAYSVLANGGKQIKPTLIDRIQDRYGKTIFRHEERGCEGCNATSWQNQDEPVIVDNR EQVLDPMTAYQTTSMLEGVVKRGTAAGKIKVDLPVAGKTGTTNDEKDAWFVGYTPDMVAGLYIGFDSPAPLGRGGTGGSL SAPIFGEFIADAAKHLEPSKFIVPAGMNFVAVNRKTGMAAAEGEPDTIMEAFKPGTGPASTFSVIGAEGYMSQEDILKTS PQAQQAITGGGGGLY >Mature_815_residues MIRLIGYFFGLASVLFLCAAVVGAIYLHGVTKDLPDYAVLSTYEPPVTTRVHAGNGALMAEYAHEKRLFLPIQAIPDRVK AAFLSAEDKNFYNHPGVDIWGLGRAILVNLQNLGSGRRPVGASTITQQVAKNFLLTNDQTIDRKLKEAILSFRIEQTYSK DKILELYLNEIFFGLNSYGIAGAALTYFNKSVTELTIAETAYLASLPKGPANYHPIRREKAALERRDWVIDRMAENGYIT VADATDAKKQPLGVNLRRGGAHIAASDYFAEEVRRQIVEKYGEEALLEGGLSVRTSFDPQIQMEARKALQDGLVQYDERR GFRGPIEKIETAGDWTAALAKVKGLRDVPEWKVAVVLAVAADGVDIGVQADPDAEDGDKRTRGHISAENMRWAFRDASGK KATSKSPVGVVTAGDVVYAQPLSGSGNEYRLRQPPKVQGGMVVMDPHTGRVLAMVGGFSYAQSEFNRSTQAMRQPGSSFK PFIYAAALDNGYTPASVILDAPIEVVSGGQVWKPQNYGGGSAGPSTLRLGIEKSRNLMTVRLAQDMGMNLVAEYAERFGI YDKMPPLLSMSLGSGETTVMRMVSAYSVLANGGKQIKPTLIDRIQDRYGKTIFRHEERGCEGCNATSWQNQDEPVIVDNR EQVLDPMTAYQTTSMLEGVVKRGTAAGKIKVDLPVAGKTGTTNDEKDAWFVGYTPDMVAGLYIGFDSPAPLGRGGTGGSL SAPIFGEFIADAAKHLEPSKFIVPAGMNFVAVNRKTGMAAAEGEPDTIMEAFKPGTGPASTFSVIGAEGYMSQEDILKTS PQAQQAITGGGGGLY
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=849, Percent_Identity=32.7444051825677, Blast_Score=407, Evalue=1e-114, Organism=Escherichia coli, GI1786343, Length=293, Percent_Identity=34.1296928327645, Blast_Score=154, Evalue=2e-38, Organism=Escherichia coli, GI1788867, Length=187, Percent_Identity=33.6898395721925, Blast_Score=102, Evalue=8e-23, Organism=Escherichia coli, GI1789601, Length=156, Percent_Identity=35.8974358974359, Blast_Score=90, Evalue=6e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 88151; Mature: 88151
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRLIGYFFGLASVLFLCAAVVGAIYLHGVTKDLPDYAVLSTYEPPVTTRVHAGNGALMA CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCCCCEEE EYAHEKRLFLPIQAIPDRVKAAFLSAEDKNFYNHPGVDIWGLGRAILVNLQNLGSGRRPV HHHCCCEEEEEHHHCCHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEHHHCCCCCCCC GASTITQQVAKNFLLTNDQTIDRKLKEAILSFRIEQTYSKDKILELYLNEIFFGLNSYGI CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC AGAALTYFNKSVTELTIAETAYLASLPKGPANYHPIRREKAALERRDWVIDRMAENGYIT HHHHHHHHCCCHHEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE VADATDAKKQPLGVNLRRGGAHIAASDYFAEEVRRQIVEKYGEEALLEGGLSVRTSFDPQ EEECCCCCCCCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEECCCCC IQMEARKALQDGLVQYDERRGFRGPIEKIETAGDWTAALAKVKGLRDVPEWKVAVVLAVA CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE ADGVDIGVQADPDAEDGDKRTRGHISAENMRWAFRDASGKKATSKSPVGVVTAGDVVYAQ CCCEEECEECCCCCCCCCCHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCEEEEC PLSGSGNEYRLRQPPKVQGGMVVMDPHTGRVLAMVGGFSYAQSEFNRSTQAMRQPGSSFK CCCCCCCCEEECCCCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC PFIYAAALDNGYTPASVILDAPIEVVSGGQVWKPQNYGGGSAGPSTLRLGIEKSRNLMTV CEEEEEECCCCCCCHHEEEECCHHEECCCCEECCCCCCCCCCCCHHEEEEECCCCCEEEE RLAQDMGMNLVAEYAERFGIYDKMPPLLSMSLGSGETTVMRMVSAYSVLANGGKQIKPTL EEHHHCCHHHHHHHHHHCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHH IDRIQDRYGKTIFRHEERGCEGCNATSWQNQDEPVIVDNREQVLDPMTAYQTTSMLEGVV HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHCHHHHHHHHHHHHHHH KRGTAAGKIKVDLPVAGKTGTTNDEKDAWFVGYTPDMVAGLYIGFDSPAPLGRGGTGGSL HCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCHHHHEEEEEECCCCCCCCCCCCCCCC SAPIFGEFIADAAKHLEPSKFIVPAGMNFVAVNRKTGMAAAEGEPDTIMEAFKPGTGPAS CCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCC TFSVIGAEGYMSQEDILKTSPQAQQAITGGGGGLY CEEEECCCCCCCHHHHHHCCCHHHHHEECCCCCCC >Mature Secondary Structure MIRLIGYFFGLASVLFLCAAVVGAIYLHGVTKDLPDYAVLSTYEPPVTTRVHAGNGALMA CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCCCCEEE EYAHEKRLFLPIQAIPDRVKAAFLSAEDKNFYNHPGVDIWGLGRAILVNLQNLGSGRRPV HHHCCCEEEEEHHHCCHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEEHHHCCCCCCCC GASTITQQVAKNFLLTNDQTIDRKLKEAILSFRIEQTYSKDKILELYLNEIFFGLNSYGI CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC AGAALTYFNKSVTELTIAETAYLASLPKGPANYHPIRREKAALERRDWVIDRMAENGYIT HHHHHHHHCCCHHEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE VADATDAKKQPLGVNLRRGGAHIAASDYFAEEVRRQIVEKYGEEALLEGGLSVRTSFDPQ EEECCCCCCCCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEECCCCC IQMEARKALQDGLVQYDERRGFRGPIEKIETAGDWTAALAKVKGLRDVPEWKVAVVLAVA CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEEEE ADGVDIGVQADPDAEDGDKRTRGHISAENMRWAFRDASGKKATSKSPVGVVTAGDVVYAQ CCCEEECEECCCCCCCCCCHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCEEEEC PLSGSGNEYRLRQPPKVQGGMVVMDPHTGRVLAMVGGFSYAQSEFNRSTQAMRQPGSSFK CCCCCCCCEEECCCCCCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC PFIYAAALDNGYTPASVILDAPIEVVSGGQVWKPQNYGGGSAGPSTLRLGIEKSRNLMTV CEEEEEECCCCCCCHHEEEECCHHEECCCCEECCCCCCCCCCCCHHEEEEECCCCCEEEE RLAQDMGMNLVAEYAERFGIYDKMPPLLSMSLGSGETTVMRMVSAYSVLANGGKQIKPTL EEHHHCCHHHHHHHHHHCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHH IDRIQDRYGKTIFRHEERGCEGCNATSWQNQDEPVIVDNREQVLDPMTAYQTTSMLEGVV HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHCHHHHHHHHHHHHHHH KRGTAAGKIKVDLPVAGKTGTTNDEKDAWFVGYTPDMVAGLYIGFDSPAPLGRGGTGGSL HCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCHHHHEEEEEECCCCCCCCCCCCCCCC SAPIFGEFIADAAKHLEPSKFIVPAGMNFVAVNRKTGMAAAEGEPDTIMEAFKPGTGPAS CCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCC TFSVIGAEGYMSQEDILKTSPQAQQAITGGGGGLY CEEEECCCCCCCHHHHHHCCCHHHHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA