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The map label for this gene is yahB [H]

Identifier: 15888545

GI number: 15888545

Start: 1202563

End: 1203531

Strand: Direct

Name: yahB [H]

Synonym: Atu1209

Alternate gene names: 15888545

Gene position: 1202563-1203531 (Clockwise)

Preceding gene: 159184666

Following gene: 159184668

Centisome position: 42.32

GC content: 62.02

Gene sequence:

>969_bases
ATGGACGCGAACCCGACGCTCGATCAATTGCAGGTGTTTTTGACGGTTGCCGAGACCGGAAGTTTTTCTGCCGCCGCACG
AGCGCTCAATCGCGCTCAGTCGGTTGTCAGCTACACCATCGCCAATCTTGAGGCACAGCTTGAGGTGGTTCTGTTCGAAC
GCAATGGCGTGCGCCAGCCCAAGCTGACCGATGAGGGCCGCGCCATGCTGGAGGATGCAAGGCGCATCGTTGCCGGTTTG
CAGGAAATGCGCGCCCGTGCCAAGGGGCTGAAGCAGGGCCTTGAAGCGGAGCTTTCCGTCGCCATCAGCACCATGGTGCC
GGCTGAGGCAGTCGTCGCCGTGTTGCGGGATTTTCGCGAACAGTTCCCCACCGTCACGCTCAGCCTCAATGTCGGCGAGC
TGGGCATGGTCATGGATATGGTGCTTTCCCGAAAGGCCGGCATCGGCATCGGCGGGGCGGTGTTGCGCCAGGACGATGAC
CTCGTCATGGAAAAGGTTGGCCATTCCTTCATGTTGCCGGTGGTTGCGGCCGATCACCCGCTGGCGCAGATCGAGCGGCC
GCTGGTTCTCGCTGACGTGCGCGAGGAGGTTCAACTCGTGGTGACGGATGCCTCCGGCCTGACCAAGGGACGGGATTTCA
ACGTGCTGTCCTACAAGACATGGCGCGTCAGCGACATCGCCACCAAATACCAGCTCATCAAGGGTGGCCTCGGCTGGGGC
GGTCTGCCTGCCTCGATCGTGCGGAATGATCTCACCAATGGCAGCCTGAAGGCGCTTGAACTAGAAGCCTATGAGCAGGG
CGAATATCCGCTCTTCACGCTGCGGCGCGTCGATTCACCGGCTGGACCCGCCGGCCAGTGGCTCGCGCAAGCCTTCCAAG
AGCGCCTGTCGGCTTGCCCGAACCACAAGGATTTCAACGGGATGCTGGAGGCGAGCAAGCAGAGGACAATGGCTGTCGCC
GCGGAGTGA

Upstream 100 bases:

>100_bases
GAGAGCACGATGCCCTGCCTTTGCGCTCTATATGAAAAATTACTGCCATCAAGAAAACCGTGATAATGTGGAAGCAATCT
ATCGATGAAATGGATGGCAC

Downstream 100 bases:

>100_bases
CATTGGCTGCAGCCACTACCGTTATATTTGGATCAAGAAGGTGCCGCTTGCTTCTCCTCCCCGGCAGGGAGATGGAACAA
GCGGCGGCGTAGGGCCCTTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MDANPTLDQLQVFLTVAETGSFSAAARALNRAQSVVSYTIANLEAQLEVVLFERNGVRQPKLTDEGRAMLEDARRIVAGL
QEMRARAKGLKQGLEAELSVAISTMVPAEAVVAVLRDFREQFPTVTLSLNVGELGMVMDMVLSRKAGIGIGGAVLRQDDD
LVMEKVGHSFMLPVVAADHPLAQIERPLVLADVREEVQLVVTDASGLTKGRDFNVLSYKTWRVSDIATKYQLIKGGLGWG
GLPASIVRNDLTNGSLKALELEAYEQGEYPLFTLRRVDSPAGPAGQWLAQAFQERLSACPNHKDFNGMLEASKQRTMAVA
AE

Sequences:

>Translated_322_residues
MDANPTLDQLQVFLTVAETGSFSAAARALNRAQSVVSYTIANLEAQLEVVLFERNGVRQPKLTDEGRAMLEDARRIVAGL
QEMRARAKGLKQGLEAELSVAISTMVPAEAVVAVLRDFREQFPTVTLSLNVGELGMVMDMVLSRKAGIGIGGAVLRQDDD
LVMEKVGHSFMLPVVAADHPLAQIERPLVLADVREEVQLVVTDASGLTKGRDFNVLSYKTWRVSDIATKYQLIKGGLGWG
GLPASIVRNDLTNGSLKALELEAYEQGEYPLFTLRRVDSPAGPAGQWLAQAFQERLSACPNHKDFNGMLEASKQRTMAVA
AE
>Mature_322_residues
MDANPTLDQLQVFLTVAETGSFSAAARALNRAQSVVSYTIANLEAQLEVVLFERNGVRQPKLTDEGRAMLEDARRIVAGL
QEMRARAKGLKQGLEAELSVAISTMVPAEAVVAVLRDFREQFPTVTLSLNVGELGMVMDMVLSRKAGIGIGGAVLRQDDD
LVMEKVGHSFMLPVVAADHPLAQIERPLVLADVREEVQLVVTDASGLTKGRDFNVLSYKTWRVSDIATKYQLIKGGLGWG
GLPASIVRNDLTNGSLKALELEAYEQGEYPLFTLRRVDSPAGPAGQWLAQAFQERLSACPNHKDFNGMLEASKQRTMAVA
AE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=295, Percent_Identity=28.4745762711864, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787949, Length=281, Percent_Identity=30.6049822064057, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786713, Length=252, Percent_Identity=30.1587301587302, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082024, Length=256, Percent_Identity=28.90625, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789492, Length=309, Percent_Identity=28.8025889967638, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1786401, Length=239, Percent_Identity=28.4518828451883, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787879, Length=267, Percent_Identity=29.5880149812734, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI157672245, Length=204, Percent_Identity=30.3921568627451, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788296, Length=176, Percent_Identity=31.25, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=245, Percent_Identity=24.0816326530612, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=27.6264591439689, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787530, Length=177, Percent_Identity=26.5536723163842, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=24.3816254416961, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35007; Mature: 35007

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDANPTLDQLQVFLTVAETGSFSAAARALNRAQSVVSYTIANLEAQLEVVLFERNGVRQP
CCCCCCHHHHHEEHEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCC
KLTDEGRAMLEDARRIVAGLQEMRARAKGLKQGLEAELSVAISTMVPAEAVVAVLRDFRE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
QFPTVTLSLNVGELGMVMDMVLSRKAGIGIGGAVLRQDDDLVMEKVGHSFMLPVVAADHP
HCCEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHEECCHHHHHHHCCCCEEEHHHCCCCC
LAQIERPLVLADVREEVQLVVTDASGLTKGRDFNVLSYKTWRVSDIATKYQLIKGGLGWG
HHHHCCCEEHHHHHCCEEEEEECCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCC
GLPASIVRNDLTNGSLKALELEAYEQGEYPLFTLRRVDSPAGPAGQWLAQAFQERLSACP
CCCHHHHHHCCCCCCEEEEEEEHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
NHKDFNGMLEASKQRTMAVAAE
CCCCCHHHHHHHHHHCEEEECC
>Mature Secondary Structure
MDANPTLDQLQVFLTVAETGSFSAAARALNRAQSVVSYTIANLEAQLEVVLFERNGVRQP
CCCCCCHHHHHEEHEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCC
KLTDEGRAMLEDARRIVAGLQEMRARAKGLKQGLEAELSVAISTMVPAEAVVAVLRDFRE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
QFPTVTLSLNVGELGMVMDMVLSRKAGIGIGGAVLRQDDDLVMEKVGHSFMLPVVAADHP
HCCEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHEECCHHHHHHHCCCCEEEHHHCCCCC
LAQIERPLVLADVREEVQLVVTDASGLTKGRDFNVLSYKTWRVSDIATKYQLIKGGLGWG
HHHHCCCEEHHHHHCCEEEEEECCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCC
GLPASIVRNDLTNGSLKALELEAYEQGEYPLFTLRRVDSPAGPAGQWLAQAFQERLSACP
CCCHHHHHHCCCCCCEEEEEEEHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
NHKDFNGMLEASKQRTMAVAAE
CCCCCHHHHHHHHHHCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]