Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is ppx [H]
Identifier: 15888482
GI number: 15888482
Start: 1135169
End: 1136692
Strand: Direct
Name: ppx [H]
Synonym: Atu1145
Alternate gene names: 15888482
Gene position: 1135169-1136692 (Clockwise)
Preceding gene: 159184636
Following gene: 15888491
Centisome position: 39.95
GC content: 60.04
Gene sequence:
>1524_bases ATGACTCGATCAGAAGCACAGGGGCGGCTGACCGGCCTTGCCCCCGTTTCCGTCATAGATATTGGTTCGAACTCCGTTCG TCTTGTCGTATATGAAGGTCTTTCCCGCGCGCCCGCGGTGCTGTTCAACGAAAAGGTCCTGTGCGGCCTTGGCAAGGGAC TGGCGCTGACGGGCCGCATGCATGAGGAAGGCGTCACCCGGGCGCTGATGGCACTCAGGCGCTTCCATGTGCTTTCCGAA CAGGCGCAGGCGCAGAAGCTTTATGTGCTTGCCACGGCGGCGGCGCGCGAGGCGGAAAACGGCCCGGATTTCATCCGCGA GGCCGAAGCCATTCTCGGCTGCGAGATCGAGGTGCTCTCAGGCGAGAAGGAAGCGCTTTATTCGGCCTATGGCGTGATCA GCGGTTTTTATCAACCCGATGGCATCGCCGGCGACCTTGGCGGCGGTTCACTCGAACTCATCGACATCAAGGACAAGAGC TGCGGCGAGGGCATCACCCTGCCGCTCGGTGGCCTTCGGCTATCGGAACAATCGGACGGTTCGCTGGAAAAGGCGGCCAC GATCGCCAGAAAACACGTCAAATCCTTCGCGAAGCTTCTGGCGGCGGGCGAGGGGCGCACCTTTTATGCGGTCGGTGGTA CATGGCGAAACATCGCCAAGCTGCATATGGAGATTTCAGGCTATCCACTGCATATGATGCAGGGGTATGAATTGCCGCTG GAAGAAATGCTGAATTTTCTCGAGGAGGTCATCGTCTCCCGGGATAGCAAGGATCCGGCCTGGCAGGCGGTCTCCAAGAA CCGCCGTTCGCTCCTGCCATTTGGCGCCATCGCCATGCGGGAAGTTCTGAGAGCGATGAAGCCGGCCAAGATTGCCTTCT CCGCGCAGGGCGTGCGTGAAGGGTATCTTTATTCGCTGCTGACGGAAGCCGAGCGCGAATCCGATCCGCTGCTGGTCGCG GCGGATGAGCTTGCCATTTTGCGCGCCCGTTCGCCCGAACATGCGCGCGAACTGGCGGATTGGAGCGGTCGCACCTTTCC TGTCTTCGGTATCGACGAGACGGAAGAAGAAAGCCGCTACAGGCAGGCGGCCTGCCTGCTGGCCGATATCAGCTGGCGGG CGCATCCCGATTATCGCGGGTTGCAGGCGCTCAACATCATCGCCCATTCGTCTTTCGTTGCGATCACCCATCCCGGCCGC GCCTATATTGCGCTTGCCAATTATTATCGCTTTGAGGGCCTGAACGATAACGGCACGACGGAACCGCTCGCCGCCATGGC GGGCGAACGTCTGCAGGAACTCGGCAAGCTGCTGGGCGGCCTGCTGCGCGTCGTTTACCTCTTCTCAGCCTCGATGCCTG GTGTCGTTGACCACCTGAAATTCCGCAAATCCGACAACCCCGATATAGATCTGGAATTCGTGGTGCCGCATGATTATTGC GATTTCGCCGGCGAGCGGCTGGATGGCCGTTTGCAACAGTTGGCGAAGCTGACGGGCAAGCGGCTGGCCTTTGTGTTTGA GTAA
Upstream 100 bases:
>100_bases TCATGACCAATCCCAGCCTTTCCGGACGTGGTGAAGCCTTGAAATCCAGTGCGCCCAAATTGATTGCCGGGTTGATTTCG TCCCGCAAGAAACAGGCTGA
Downstream 100 bases:
>100_bases CGAACGGCAATGCCCTGTTTTGCGGCGCTGGCTACGACCAGCGCTCGCAAAAGGCTTCGATATCTCCTGACTGGAAGTCG GCGAGCCGCGCCATGATCGT
Product: exopolyphosphatase
Products: NA
Alternate protein names: ExopolyPase; Metaphosphatase [H]
Number of amino acids: Translated: 507; Mature: 506
Protein sequence:
>507_residues MTRSEAQGRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSE QAQAQKLYVLATAAAREAENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKS CGEGITLPLGGLRLSEQSDGSLEKAATIARKHVKSFAKLLAAGEGRTFYAVGGTWRNIAKLHMEISGYPLHMMQGYELPL EEMLNFLEEVIVSRDSKDPAWQAVSKNRRSLLPFGAIAMREVLRAMKPAKIAFSAQGVREGYLYSLLTEAERESDPLLVA ADELAILRARSPEHARELADWSGRTFPVFGIDETEEESRYRQAACLLADISWRAHPDYRGLQALNIIAHSSFVAITHPGR AYIALANYYRFEGLNDNGTTEPLAAMAGERLQELGKLLGGLLRVVYLFSASMPGVVDHLKFRKSDNPDIDLEFVVPHDYC DFAGERLDGRLQQLAKLTGKRLAFVFE
Sequences:
>Translated_507_residues MTRSEAQGRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSE QAQAQKLYVLATAAAREAENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKS CGEGITLPLGGLRLSEQSDGSLEKAATIARKHVKSFAKLLAAGEGRTFYAVGGTWRNIAKLHMEISGYPLHMMQGYELPL EEMLNFLEEVIVSRDSKDPAWQAVSKNRRSLLPFGAIAMREVLRAMKPAKIAFSAQGVREGYLYSLLTEAERESDPLLVA ADELAILRARSPEHARELADWSGRTFPVFGIDETEEESRYRQAACLLADISWRAHPDYRGLQALNIIAHSSFVAITHPGR AYIALANYYRFEGLNDNGTTEPLAAMAGERLQELGKLLGGLLRVVYLFSASMPGVVDHLKFRKSDNPDIDLEFVVPHDYC DFAGERLDGRLQQLAKLTGKRLAFVFE >Mature_506_residues TRSEAQGRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSEQ AQAQKLYVLATAAAREAENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSC GEGITLPLGGLRLSEQSDGSLEKAATIARKHVKSFAKLLAAGEGRTFYAVGGTWRNIAKLHMEISGYPLHMMQGYELPLE EMLNFLEEVIVSRDSKDPAWQAVSKNRRSLLPFGAIAMREVLRAMKPAKIAFSAQGVREGYLYSLLTEAERESDPLLVAA DELAILRARSPEHARELADWSGRTFPVFGIDETEEESRYRQAACLLADISWRAHPDYRGLQALNIIAHSSFVAITHPGRA YIALANYYRFEGLNDNGTTEPLAAMAGERLQELGKLLGGLLRVVYLFSASMPGVVDHLKFRKSDNPDIDLEFVVPHDYCD FAGERLDGRLQQLAKLTGKRLAFVFE
Specific function: Degradation of inorganic polyphosphates. Orthophosphate is released progressively from the ends of polyphosphate [H]
COG id: COG0248
COG function: function code FP; Exopolyphosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gppA/ppx family [H]
Homologues:
Organism=Escherichia coli, GI48994966, Length=301, Percent_Identity=24.2524916943522, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1788848, Length=396, Percent_Identity=22.4747474747475, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6321185, Length=361, Percent_Identity=26.5927977839335, Blast_Score=88, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022371 - InterPro: IPR003695 [H]
Pfam domain/function: PF02541 Ppx-GppA [H]
EC number: =3.6.1.11 [H]
Molecular weight: Translated: 55591; Mature: 55460
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRSEAQGRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRM CCCCCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCCHHHCCCEEEEECCCCEEEECCH HEEGVTRALMALRRFHVLSEQAQAQKLYVLATAAAREAENGPDFIREAEAILGCEIEVLS HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEHHHHCCCCCHHHHHHHHHHHCCEEEEEC GEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGEGITLPLGGLRLSEQSDG CCHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEEECCCCCCCCCEECCCCEEECCCCCC SLEKAATIARKHVKSFAKLLAAGEGRTFYAVGGTWRNIAKLHMEISGYPLHMMQGYELPL CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHEEEECCCCEEECCCCCCCH EEMLNFLEEVIVSRDSKDPAWQAVSKNRRSLLPFGAIAMREVLRAMKPAKIAFSAQGVRE HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHH GYLYSLLTEAERESDPLLVAADELAILRARSPEHARELADWSGRTFPVFGIDETEEESRY HHHHHHHHHHHCCCCCEEEEECCEEEEECCCHHHHHHHHHCCCCEEEEECCCCCHHHHHH RQAACLLADISWRAHPDYRGLQALNIIAHSSFVAITHPGRAYIALANYYRFEGLNDNGTT HHHHHHHEECCCCCCCCCCCHHHHHHEECCCEEEEECCCCEEEEEEEEHEECCCCCCCCC EPLAAMAGERLQELGKLLGGLLRVVYLFSASMPGVVDHLKFRKSDNPDIDLEFVVPHDYC CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEEECCCHH DFAGERLDGRLQQLAKLTGKRLAFVFE HHHHHHHHHHHHHHHHHCCCCEEEEEC >Mature Secondary Structure TRSEAQGRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRM CCCCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCCHHHCCCEEEEECCCCEEEECCH HEEGVTRALMALRRFHVLSEQAQAQKLYVLATAAAREAENGPDFIREAEAILGCEIEVLS HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEHHHHCCCCCHHHHHHHHHHHCCEEEEEC GEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGEGITLPLGGLRLSEQSDG CCHHHHHHHHHHHHCCCCCCCCEECCCCCEEEEEEECCCCCCCCCEECCCCEEECCCCCC SLEKAATIARKHVKSFAKLLAAGEGRTFYAVGGTWRNIAKLHMEISGYPLHMMQGYELPL CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHEEEECCCCEEECCCCCCCH EEMLNFLEEVIVSRDSKDPAWQAVSKNRRSLLPFGAIAMREVLRAMKPAKIAFSAQGVRE HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHH GYLYSLLTEAERESDPLLVAADELAILRARSPEHARELADWSGRTFPVFGIDETEEESRY HHHHHHHHHHHCCCCCEEEEECCEEEEECCCHHHHHHHHHCCCCEEEEECCCCCHHHHHH RQAACLLADISWRAHPDYRGLQALNIIAHSSFVAITHPGRAYIALANYYRFEGLNDNGTT HHHHHHHEECCCCCCCCCCCHHHHHHEECCCEEEEECCCCEEEEEEEEHEECCCCCCCCC EPLAAMAGERLQELGKLLGGLLRVVYLFSASMPGVVDHLKFRKSDNPDIDLEFVVPHDYC CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEEECCCHH DFAGERLDGRLQQLAKLTGKRLAFVFE HHHHHHHHHHHHHHHHHCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10382967; 10984043 [H]