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The map label for this gene is ygaU [C]

Identifier: 15888408

GI number: 15888408

Start: 1055979

End: 1058003

Strand: Reverse

Name: ygaU [C]

Synonym: Atu8147

Alternate gene names: 15888408

Gene position: 1058003-1055979 (Counterclockwise)

Preceding gene: 159184603

Following gene: 159184600

Centisome position: 37.23

GC content: 64.35

Gene sequence:

>2025_bases
ATGAAAAACAATAAGGCCGGTTTGCTGGCGCTGATCGTGCTGGGCATTGCGTCCCTGCTCATGATCTTTTTCGTCCTGCC
GAGGATTTCCAACGACGGCAAACCGATCGGCGACGCCATCAACGAGGCCGGCAACGCGGTGAAGAACAGCGTTGAAATGG
GAGCCGACAAGGCGGGTGACATCCTCTCCGACGCGGCCGAGGAGACGGCCAGCATTGCCGACAAGGTCGGCCGCCGGGCG
GCTTCCGCAACCCAGTCGATCAAGGACATGGCCTCGCTTTTCGCCGACAACAAGGTTCCGTCCGATGCCGATTTTGCAGC
GGCCCGCAAAAAGGTCGAGGCTTCGCTGAAGGAACTGACCAATATCGACATTCCAGAGTCGCTGGACGAAACCACGTCGC
GGCTCATCACCACGGCGCGTGCCGCGGCCGAACGCACTACTGCCTTCCTGCGCGGCCTGCCTGACAATGCGGCTGCCGCG
GCAGCACAGGTCCGCCGTCTGGCTGGCGTATTTGCCGGCACCGACGATGGCGCGCCTCAAGCCGCAAATCCGACCGCCGC
CCCCGCCGATGCCGCCCAGGCCTCTTCCGGCACACCGACATTCGACGTGCTGCGCGTCGAGCCCGATGGTTCGGCCGTGA
TCGCCGGCAAGGCGCAGCCCGGCGCAAAGCTTGAAATTCTGAGCAACGGCAAGGTGATCGCCCAGACGACCATCGACGGC
ACGGGCGATTTCGCCGCCGTTTTCGACAATCCCCTGCCGCCCGGCGATCATGAGCTGGTGTTGCGTTCAACCGATGCCAA
CGGCAAGGCGACGCAGTCCGAGGAAGTGGCGACCGTTTCCGTACCGCAGAGCAAGTCGGGCGAGCTTCTGGCCATGGTTT
CCAAACCCGGCAAGGCAAGCCGTGTGCTGGCCATGCCCGAGGCAGCACCTCCAGCGCTCCAGCCGCAGCAGGCCACGCCG
TCGCAACCGTCTGCCGCAACCTCCGAAACCACCGCCAACAATACGCCCGTGCCCTCTTCGGGCACTGCCGCTCCCACCGC
TGCCGGATCGACTGCCGTTGCCCCGCTCACGTCGAGCGTTCAGGTCACCGCCGTCGAATTCGAGGGATCGAAGATCTTCG
TCGCGGGTTCCGCGCCAGGCGGTTCGACCGTTCGCGCGCTTGTCGACGACAAGGAAATCGGCAAGAGCACGACTGAGGCA
TCCGGTCATTTCGTCATCGAAGGCGATGTCGATCTTGCCGTCGGCAGCCACATCATCACCGTCGAGGAACTGAATGCCGA
TGGCACGGCGAAGGTGCGGGTGCGCGTTCCCTTCGAGCGGCCGCAGACCGATCAGGCAACCGTTGCCATGCAGGCCCCAT
CGGCCTCATCGTCGGCCAACACGACCGCGGCACCGGCTGAAAACCAGAGCACGGCGAGTGACCGCGCCGCATTTGAAAAG
CTGCGCACCGATGTCGCCAAGGCGTTCGGCATCCTCTCCAATCTTTACAAGGATCAGGCGACGCCGGCGCTCGATCAGGC
CATTGCCGGCCGCTCCGCGGTGGTGATCGCGCTGAAATCGCTCTCCGAGTTCCGCACTGCCGCTGCCACGGAGCCTGACT
TCACCGCTTTTGCCGGCGATATCACGGGCAAGGCGCGTCAGCTGCTTGCGACGGTAGAAGCCTGGCCGAACGATGTGGCC
GCCATCGGCAAGGGCATCGCCTCGCTGGCAAGCCGCCTCGCCGAACTGCACATCATCGCTCCGCCTGCGCCCGTGCCGCA
AGTCCCTGCCGGCCCTCAGACCTTCGAGCAGGCACCGCTTGCCGAAAGCCAGAACAGCGTCATCATCCGCCGCGGCGACA
CGCTGTGGCAGATTTCCCGGCGCGTTTACGGACAGGGCGTGCGTTACACCACGATCTACCTCGCCAATGAGGACCAGATC
AGAAACCCTGACCTGATCGAGCCCGGCCAGATTTTCGGCGTGCCGAAAGAGGCACTGCCGAACGCGGAAGAACTCCACCG
CAAGCGGCTGAAGAGTGGCTCCTGA

Upstream 100 bases:

>100_bases
CAAATATGGCCTTTTGCCCACTCGCCGCTTGTCTGGCGAAGGGTAAGACGCTAGCAATCTCAACTCGTGTGAAAAGCTTG
AAATATCCGGAGATTCCAGG

Downstream 100 bases:

>100_bases
GGATGTGAAGACGTTGCGATGAACCCGCAACGATCCTATCTGTGACACGCGCGGCGGCTTGACCAAAGCCGCCGTCCTGC
TGTCGGCTTCCGGCAGTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: LysM Domain-Containing Protein

Number of amino acids: Translated: 674; Mature: 674

Protein sequence:

>674_residues
MKNNKAGLLALIVLGIASLLMIFFVLPRISNDGKPIGDAINEAGNAVKNSVEMGADKAGDILSDAAEETASIADKVGRRA
ASATQSIKDMASLFADNKVPSDADFAAARKKVEASLKELTNIDIPESLDETTSRLITTARAAAERTTAFLRGLPDNAAAA
AAQVRRLAGVFAGTDDGAPQAANPTAAPADAAQASSGTPTFDVLRVEPDGSAVIAGKAQPGAKLEILSNGKVIAQTTIDG
TGDFAAVFDNPLPPGDHELVLRSTDANGKATQSEEVATVSVPQSKSGELLAMVSKPGKASRVLAMPEAAPPALQPQQATP
SQPSAATSETTANNTPVPSSGTAAPTAAGSTAVAPLTSSVQVTAVEFEGSKIFVAGSAPGGSTVRALVDDKEIGKSTTEA
SGHFVIEGDVDLAVGSHIITVEELNADGTAKVRVRVPFERPQTDQATVAMQAPSASSSANTTAAPAENQSTASDRAAFEK
LRTDVAKAFGILSNLYKDQATPALDQAIAGRSAVVIALKSLSEFRTAAATEPDFTAFAGDITGKARQLLATVEAWPNDVA
AIGKGIASLASRLAELHIIAPPAPVPQVPAGPQTFEQAPLAESQNSVIIRRGDTLWQISRRVYGQGVRYTTIYLANEDQI
RNPDLIEPGQIFGVPKEALPNAEELHRKRLKSGS

Sequences:

>Translated_674_residues
MKNNKAGLLALIVLGIASLLMIFFVLPRISNDGKPIGDAINEAGNAVKNSVEMGADKAGDILSDAAEETASIADKVGRRA
ASATQSIKDMASLFADNKVPSDADFAAARKKVEASLKELTNIDIPESLDETTSRLITTARAAAERTTAFLRGLPDNAAAA
AAQVRRLAGVFAGTDDGAPQAANPTAAPADAAQASSGTPTFDVLRVEPDGSAVIAGKAQPGAKLEILSNGKVIAQTTIDG
TGDFAAVFDNPLPPGDHELVLRSTDANGKATQSEEVATVSVPQSKSGELLAMVSKPGKASRVLAMPEAAPPALQPQQATP
SQPSAATSETTANNTPVPSSGTAAPTAAGSTAVAPLTSSVQVTAVEFEGSKIFVAGSAPGGSTVRALVDDKEIGKSTTEA
SGHFVIEGDVDLAVGSHIITVEELNADGTAKVRVRVPFERPQTDQATVAMQAPSASSSANTTAAPAENQSTASDRAAFEK
LRTDVAKAFGILSNLYKDQATPALDQAIAGRSAVVIALKSLSEFRTAAATEPDFTAFAGDITGKARQLLATVEAWPNDVA
AIGKGIASLASRLAELHIIAPPAPVPQVPAGPQTFEQAPLAESQNSVIIRRGDTLWQISRRVYGQGVRYTTIYLANEDQI
RNPDLIEPGQIFGVPKEALPNAEELHRKRLKSGS
>Mature_674_residues
MKNNKAGLLALIVLGIASLLMIFFVLPRISNDGKPIGDAINEAGNAVKNSVEMGADKAGDILSDAAEETASIADKVGRRA
ASATQSIKDMASLFADNKVPSDADFAAARKKVEASLKELTNIDIPESLDETTSRLITTARAAAERTTAFLRGLPDNAAAA
AAQVRRLAGVFAGTDDGAPQAANPTAAPADAAQASSGTPTFDVLRVEPDGSAVIAGKAQPGAKLEILSNGKVIAQTTIDG
TGDFAAVFDNPLPPGDHELVLRSTDANGKATQSEEVATVSVPQSKSGELLAMVSKPGKASRVLAMPEAAPPALQPQQATP
SQPSAATSETTANNTPVPSSGTAAPTAAGSTAVAPLTSSVQVTAVEFEGSKIFVAGSAPGGSTVRALVDDKEIGKSTTEA
SGHFVIEGDVDLAVGSHIITVEELNADGTAKVRVRVPFERPQTDQATVAMQAPSASSSANTTAAPAENQSTASDRAAFEK
LRTDVAKAFGILSNLYKDQATPALDQAIAGRSAVVIALKSLSEFRTAAATEPDFTAFAGDITGKARQLLATVEAWPNDVA
AIGKGIASLASRLAELHIIAPPAPVPQVPAGPQTFEQAPLAESQNSVIIRRGDTLWQISRRVYGQGVRYTTIYLANEDQI
RNPDLIEPGQIFGVPKEALPNAEELHRKRLKSGS

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69488; Mature: 69488

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNKAGLLALIVLGIASLLMIFFVLPRISNDGKPIGDAINEAGNAVKNSVEMGADKAGD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
ILSDAAEETASIADKVGRRAASATQSIKDMASLFADNKVPSDADFAAARKKVEASLKELT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
NIDIPESLDETTSRLITTARAAAERTTAFLRGLPDNAAAAAAQVRRLAGVFAGTDDGAPQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
AANPTAAPADAAQASSGTPTFDVLRVEPDGSAVIAGKAQPGAKLEILSNGKVIAQTTIDG
CCCCCCCCCCHHCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEECCCCEEEEEECCC
TGDFAAVFDNPLPPGDHELVLRSTDANGKATQSEEVATVSVPQSKSGELLAMVSKPGKAS
CCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCC
RVLAMPEAAPPALQPQQATPSQPSAATSETTANNTPVPSSGTAAPTAAGSTAVAPLTSSV
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCE
QVTAVEFEGSKIFVAGSAPGGSTVRALVDDKEIGKSTTEASGHFVIEGDVDLAVGSHIIT
EEEEEEECCCEEEEEECCCCCCEEEEEECCHHHCCCCCCCCCCEEEECCCEEECCCEEEE
VEELNADGTAKVRVRVPFERPQTDQATVAMQAPSASSSANTTAAPAENQSTASDRAAFEK
EEEECCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LRTDVAKAFGILSNLYKDQATPALDQAIAGRSAVVIALKSLSEFRTAAATEPDFTAFAGD
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCHHEECC
ITGKARQLLATVEAWPNDVAAIGKGIASLASRLAELHIIAPPAPVPQVPAGPQTFEQAPL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHCCCC
AESQNSVIIRRGDTLWQISRRVYGQGVRYTTIYLANEDQIRNPDLIEPGQIFGVPKEALP
CCCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCEECCCHHHCC
NAEELHRKRLKSGS
CHHHHHHHHHCCCC
>Mature Secondary Structure
MKNNKAGLLALIVLGIASLLMIFFVLPRISNDGKPIGDAINEAGNAVKNSVEMGADKAGD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
ILSDAAEETASIADKVGRRAASATQSIKDMASLFADNKVPSDADFAAARKKVEASLKELT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
NIDIPESLDETTSRLITTARAAAERTTAFLRGLPDNAAAAAAQVRRLAGVFAGTDDGAPQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
AANPTAAPADAAQASSGTPTFDVLRVEPDGSAVIAGKAQPGAKLEILSNGKVIAQTTIDG
CCCCCCCCCCHHCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEECCCCEEEEEECCC
TGDFAAVFDNPLPPGDHELVLRSTDANGKATQSEEVATVSVPQSKSGELLAMVSKPGKAS
CCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCC
RVLAMPEAAPPALQPQQATPSQPSAATSETTANNTPVPSSGTAAPTAAGSTAVAPLTSSV
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCE
QVTAVEFEGSKIFVAGSAPGGSTVRALVDDKEIGKSTTEASGHFVIEGDVDLAVGSHIIT
EEEEEEECCCEEEEEECCCCCCEEEEEECCHHHCCCCCCCCCCEEEECCCEEECCCEEEE
VEELNADGTAKVRVRVPFERPQTDQATVAMQAPSASSSANTTAAPAENQSTASDRAAFEK
EEEECCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LRTDVAKAFGILSNLYKDQATPALDQAIAGRSAVVIALKSLSEFRTAAATEPDFTAFAGD
HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCHHEECC
ITGKARQLLATVEAWPNDVAAIGKGIASLASRLAELHIIAPPAPVPQVPAGPQTFEQAPL
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHCCCC
AESQNSVIIRRGDTLWQISRRVYGQGVRYTTIYLANEDQIRNPDLIEPGQIFGVPKEALP
CCCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCEECCCHHHCC
NAEELHRKRLKSGS
CHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA