Click here to switch to the map view.

The map label for this gene is yrpE [H]

Identifier: 15888391

GI number: 15888391

Start: 1042991

End: 1043674

Strand: Reverse

Name: yrpE [H]

Synonym: Atu1049

Alternate gene names: 15888391

Gene position: 1043674-1042991 (Counterclockwise)

Preceding gene: 15888392

Following gene: 15888387

Centisome position: 36.73

GC content: 57.31

Gene sequence:

>684_bases
ATGCAGAAGACACTGACCCGCGTCACCGGCGCGCTCGCACTTGGTTCCATGCTGGTGGCGGCTGCCGCGGCAACGGCTGC
CGGCGGCGACAAACCCGCTGCCCACAGCCATAACCATGGTCATGACCACAGCCAGATGACCGAGGCTGAAAAGCAGATTT
ACAAGGGATATTTCGAAGATGCGCAGGTAAAGCCGCGCCCGCTGACGGACTGGGAAGGCGACTGGCAGTCGGTCTATCCT
TACCTGCTGAACGGTTCGCTGGATTCCGTCATGGCTGAAAAGGCAGCTCATGGCGACAAGACCGCCGCAGAATACCGCGC
CTATTACGAAATCGGCTACAAGACCGATGTCAACCGCATCGTGATCGCGCCCGACAGCGTTACCTTTTATAAGGAAGGCA
AGCCGACCAAGGGCACCTATGTCAGCGACGGCCAGGAGATTTTAACCTACAAGAAGGGCAACCGCGGCGTTCGTTACATC
TTCAAGAAAACCGCCGGCGACGAGGCCGCACCGCAGTTCATCCAGTTTAGCGACCACACCATCGCACCGAAGAAGGCCGG
ACATTATCATCTTTATTGGGGCAACGACCGCAAGGCGCTTATGGACGAAGTCACCAATTGGCCGACCTATTACCCCTTCC
TAATGGACGGCGCTGACATCGTTGAGGAAATGGCGGCGCATTAA

Upstream 100 bases:

>100_bases
AACACCCACCCTTGCATCCTGCCAAAGACGCCTCTATAGGTCGAAATGTAATGTTATTACGTTACTTGTTTTTGATCGCA
GACTGAAGAGGGCCGAAACA

Downstream 100 bases:

>100_bases
TTTTGCACCCCATGGTCAGCATGGGTGTTTTTTGCGCCCGTGCTGCATCTCTCACTGCCCCATGGTCGAACGATGGGCCC
AGCCGGTCATGCGCTTTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MQKTLTRVTGALALGSMLVAAAAATAAGGDKPAAHSHNHGHDHSQMTEAEKQIYKGYFEDAQVKPRPLTDWEGDWQSVYP
YLLNGSLDSVMAEKAAHGDKTAAEYRAYYEIGYKTDVNRIVIAPDSVTFYKEGKPTKGTYVSDGQEILTYKKGNRGVRYI
FKKTAGDEAAPQFIQFSDHTIAPKKAGHYHLYWGNDRKALMDEVTNWPTYYPFLMDGADIVEEMAAH

Sequences:

>Translated_227_residues
MQKTLTRVTGALALGSMLVAAAAATAAGGDKPAAHSHNHGHDHSQMTEAEKQIYKGYFEDAQVKPRPLTDWEGDWQSVYP
YLLNGSLDSVMAEKAAHGDKTAAEYRAYYEIGYKTDVNRIVIAPDSVTFYKEGKPTKGTYVSDGQEILTYKKGNRGVRYI
FKKTAGDEAAPQFIQFSDHTIAPKKAGHYHLYWGNDRKALMDEVTNWPTYYPFLMDGADIVEEMAAH
>Mature_227_residues
MQKTLTRVTGALALGSMLVAAAAATAAGGDKPAAHSHNHGHDHSQMTEAEKQIYKGYFEDAQVKPRPLTDWEGDWQSVYP
YLLNGSLDSVMAEKAAHGDKTAAEYRAYYEIGYKTDVNRIVIAPDSVTFYKEGKPTKGTYVSDGQEILTYKKGNRGVRYI
FKKTAGDEAAPQFIQFSDHTIAPKKAGHYHLYWGNDRKALMDEVTNWPTYYPFLMDGADIVEEMAAH

Specific function: May Be Involved In Stress Response. [C]

COG id: COG3443

COG function: function code R; Predicted periplasmic or secreted protein

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. YodA family [H]

Homologues:

Organism=Escherichia coli, GI1788284, Length=220, Percent_Identity=45, Blast_Score=188, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR015304 [H]

Pfam domain/function: PF09223 YodA [H]

EC number: NA

Molecular weight: Translated: 25260; Mature: 25260

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKTLTRVTGALALGSMLVAAAAATAAGGDKPAAHSHNHGHDHSQMTEAEKQIYKGYFED
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
AQVKPRPLTDWEGDWQSVYPYLLNGSLDSVMAEKAAHGDKTAAEYRAYYEIGYKTDVNRI
CCCCCCCCCCCCCCHHHHCHHHCCCCHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCCEE
VIAPDSVTFYKEGKPTKGTYVSDGQEILTYKKGNRGVRYIFKKTAGDEAAPQFIQFSDHT
EECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCHHEECCCCE
IAPKKAGHYHLYWGNDRKALMDEVTNWPTYYPFLMDGADIVEEMAAH
ECCCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHCC
>Mature Secondary Structure
MQKTLTRVTGALALGSMLVAAAAATAAGGDKPAAHSHNHGHDHSQMTEAEKQIYKGYFED
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
AQVKPRPLTDWEGDWQSVYPYLLNGSLDSVMAEKAAHGDKTAAEYRAYYEIGYKTDVNRI
CCCCCCCCCCCCCCHHHHCHHHCCCCHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCCEE
VIAPDSVTFYKEGKPTKGTYVSDGQEILTYKKGNRGVRYIFKKTAGDEAAPQFIQFSDHT
EECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCHHEECCCCE
IAPKKAGHYHLYWGNDRKALMDEVTNWPTYYPFLMDGADIVEEMAAH
ECCCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]