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The map label for this gene is yjcC [C]

Identifier: 15888166

GI number: 15888166

Start: 824034

End: 825845

Strand: Reverse

Name: yjcC [C]

Synonym: Atu0826

Alternate gene names: 15888166

Gene position: 825845-824034 (Counterclockwise)

Preceding gene: 15888167

Following gene: 159184482

Centisome position: 29.06

GC content: 59.38

Gene sequence:

>1812_bases
ATGCAGGCCGTCGCGCTAGAGAACGATGTCATCAGGCGTTTTGCCTCCGGGCAGATGTTTCCGATGGCGAAACTGGTGCT
GGAAACGGCGTTCCAGCCGATTGTGGAAGCGACGACGGGCACGATTTTCGGTTATGAATCGCTGATGCGCGGCCATGACC
GGCTTGGTTTTTCCAGTCCGCTGGCGCTTCTCGACCAGGCCGCCGCGGATGGCGAGTTGAAGGCCTTCGAGCAGATGCTG
GCAAGCCGGGCGCTCGCGAAATTTTCCACCCTGCCCGACTTCTCCTCCGCCACGCTTTTCCTCAATCTCGATGTGCGGCT
CATTCCGCATGGCGATGTCATTCTCGACAAGCTCGTCGGCCATCTGGCCCGGGCGGGCATTCCCGCCTCCTCCATCTGCT
TTGAGCTTTCCGAACGGTTCGACAATACCAGCGTGCCGGAATTTACGTCGCTGATCGCCCGCATGCGCAAGGAAGGCTTC
AAGCTGGCGATCGACGATTTCGGCGCCGGCCACGGCGAGATGAAGCTGCTCTGCGACTTCCCGCTGGATTACCTCAAGAT
CGACCGGCATTTCATCTCCGGTATCGACCATTTGCCGCGCAAGCAGCATCTGGTGCGCAACATCGTCAATATCGCCCATG
TTCTCGGCGTCAGGGTGATTGCGGAAGGTATCGAAACGGAAGCTGAGTTCCTCTCCTGCCGCGAATTCGGCGTCGATCTG
GTGCAGGGCTGGCTTATCGCCAAGCCGACGGTCTTCACCAGCGAATTGCCCGAGAGCTTTCCGCACCTCAACCGCGTGGG
CGTGGCGCGACGCAACAGCCAGACGCTGGACGAGATTCTGATCCGCCGGGAAATCGAGCGCCTCCCTACCGTGTTCGAAC
ATGACAGCGTCGACAGCGTCTTCGAACTCTTTCGCAGAAATCCGCAGCAGGCCTTCTTCCCGGTTCTCAACGCCAATGGC
GAACCGCGCGGCGTCATCAACGAATATCACCTCAAGGAATATATCTACCGGCCCTTCGGCCGCGATCTGCTCAAGAACAA
GATCTATGAGCGCACCATTTCCCATTTCGTCGATCCTGCGCCGATCGTCGGCCTCGATGCGGATGCGGACCAGCTGATGA
ACATGTTCGCCAGCATGGGTGGCATGGGTGGCAGCGCCTGCATCATCCTGACCGAAAACATGCGATATGCCGGCATCGTT
TCGGCCGCGTCGCTGATCAAGGTGATCAATGAAAAACAGCTGAAGATGGCGCAGGACCAGAACCCGCTGACGGCGCTGCC
CGGCAACCGCGCGATTGGCGGCTTCATTGCCGACAGTTGCAGCGACGGCGACGAGACGCGCTTCTTCTGCTACTGCGACT
TCGACAATTTCAAACCCTTCAACGACAAATACGGCTTCAACGCCGGCGACCACGCCATCACCCTGTTTTCGGCGCTGATG
CGCCGTTATTTCTTCGCCGGTGACTGCTTCCTTGGCCATATTGGCGGCGACGATTTCTTCATCGGTGTGCGTGACTGGTC
GGTGGAGGAACTGATGGAAATCCTGGAGCGGCTGCTCAGCGATTTCCACGACGACGTCGCCGGGCTTTATTCGGACGAAG
ACCGTGCCGCCGGATGCATGAAGGGCCAGGACCGCAACGGCAATGAACGGGATTTTGCGCTGCTGCGCTGCTCCATCGGC
GTTCTTACTTTGCCGAAGGGATCGATCATCGCCAATCCCGAGCGGATCGGCAGCGAGATTGCCAGCGTCAAGGCGGCCGC
GAAGGAGAACGAAGGCGGCCTCGTCGTCAGGGTATTCGGCGAGGCAAATTGA

Upstream 100 bases:

>100_bases
AAGCTTTTGTTGACCTGTAATCTGCAATTGTTCACCGCAAAAGAGACGGGATCCCCCAAGGTTAGCCATCGAGGGGACGG
ACAATAGCGGAGAAACAGAA

Downstream 100 bases:

>100_bases
CACCAGCGACAAACGGACTCCTTCCCTCAAGCGCACATCTGACCTACATCTTCAGGTGACGCCGACAAGTGAGGAGTTGC
CCCTACCCATGTCCGACACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 603; Mature: 603

Protein sequence:

>603_residues
MQAVALENDVIRRFASGQMFPMAKLVLETAFQPIVEATTGTIFGYESLMRGHDRLGFSSPLALLDQAAADGELKAFEQML
ASRALAKFSTLPDFSSATLFLNLDVRLIPHGDVILDKLVGHLARAGIPASSICFELSERFDNTSVPEFTSLIARMRKEGF
KLAIDDFGAGHGEMKLLCDFPLDYLKIDRHFISGIDHLPRKQHLVRNIVNIAHVLGVRVIAEGIETEAEFLSCREFGVDL
VQGWLIAKPTVFTSELPESFPHLNRVGVARRNSQTLDEILIRREIERLPTVFEHDSVDSVFELFRRNPQQAFFPVLNANG
EPRGVINEYHLKEYIYRPFGRDLLKNKIYERTISHFVDPAPIVGLDADADQLMNMFASMGGMGGSACIILTENMRYAGIV
SAASLIKVINEKQLKMAQDQNPLTALPGNRAIGGFIADSCSDGDETRFFCYCDFDNFKPFNDKYGFNAGDHAITLFSALM
RRYFFAGDCFLGHIGGDDFFIGVRDWSVEELMEILERLLSDFHDDVAGLYSDEDRAAGCMKGQDRNGNERDFALLRCSIG
VLTLPKGSIIANPERIGSEIASVKAAAKENEGGLVVRVFGEAN

Sequences:

>Translated_603_residues
MQAVALENDVIRRFASGQMFPMAKLVLETAFQPIVEATTGTIFGYESLMRGHDRLGFSSPLALLDQAAADGELKAFEQML
ASRALAKFSTLPDFSSATLFLNLDVRLIPHGDVILDKLVGHLARAGIPASSICFELSERFDNTSVPEFTSLIARMRKEGF
KLAIDDFGAGHGEMKLLCDFPLDYLKIDRHFISGIDHLPRKQHLVRNIVNIAHVLGVRVIAEGIETEAEFLSCREFGVDL
VQGWLIAKPTVFTSELPESFPHLNRVGVARRNSQTLDEILIRREIERLPTVFEHDSVDSVFELFRRNPQQAFFPVLNANG
EPRGVINEYHLKEYIYRPFGRDLLKNKIYERTISHFVDPAPIVGLDADADQLMNMFASMGGMGGSACIILTENMRYAGIV
SAASLIKVINEKQLKMAQDQNPLTALPGNRAIGGFIADSCSDGDETRFFCYCDFDNFKPFNDKYGFNAGDHAITLFSALM
RRYFFAGDCFLGHIGGDDFFIGVRDWSVEELMEILERLLSDFHDDVAGLYSDEDRAAGCMKGQDRNGNERDFALLRCSIG
VLTLPKGSIIANPERIGSEIASVKAAAKENEGGLVVRVFGEAN
>Mature_603_residues
MQAVALENDVIRRFASGQMFPMAKLVLETAFQPIVEATTGTIFGYESLMRGHDRLGFSSPLALLDQAAADGELKAFEQML
ASRALAKFSTLPDFSSATLFLNLDVRLIPHGDVILDKLVGHLARAGIPASSICFELSERFDNTSVPEFTSLIARMRKEGF
KLAIDDFGAGHGEMKLLCDFPLDYLKIDRHFISGIDHLPRKQHLVRNIVNIAHVLGVRVIAEGIETEAEFLSCREFGVDL
VQGWLIAKPTVFTSELPESFPHLNRVGVARRNSQTLDEILIRREIERLPTVFEHDSVDSVFELFRRNPQQAFFPVLNANG
EPRGVINEYHLKEYIYRPFGRDLLKNKIYERTISHFVDPAPIVGLDADADQLMNMFASMGGMGGSACIILTENMRYAGIV
SAASLIKVINEKQLKMAQDQNPLTALPGNRAIGGFIADSCSDGDETRFFCYCDFDNFKPFNDKYGFNAGDHAITLFSALM
RRYFFAGDCFLGHIGGDDFFIGVRDWSVEELMEILERLLSDFHDDVAGLYSDEDRAAGCMKGQDRNGNERDFALLRCSIG
VLTLPKGSIIANPERIGSEIASVKAAAKENEGGLVVRVFGEAN

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=238, Percent_Identity=27.3109243697479, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081743, Length=228, Percent_Identity=28.9473684210526, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081921, Length=231, Percent_Identity=26.8398268398268, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI226510982, Length=233, Percent_Identity=30.4721030042918, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=30.0429184549356, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787055, Length=232, Percent_Identity=28.0172413793103, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786507, Length=226, Percent_Identity=27.4336283185841, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787541, Length=100, Percent_Identity=39, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081845, Length=264, Percent_Identity=24.2424242424242, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787410, Length=221, Percent_Identity=27.6018099547511, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081980, Length=230, Percent_Identity=25.6521739130435, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788849, Length=140, Percent_Identity=32.1428571428571, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87082096, Length=138, Percent_Identity=29.7101449275362, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 66992; Mature: 66992

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAVALENDVIRRFASGQMFPMAKLVLETAFQPIVEATTGTIFGYESLMRGHDRLGFSSP
CCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCH
LALLDQAAADGELKAFEQMLASRALAKFSTLPDFSSATLFLNLDVRLIPHGDVILDKLVG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHH
HLARAGIPASSICFELSERFDNTSVPEFTSLIARMRKEGFKLAIDDFGAGHGEMKLLCDF
HHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECC
PLDYLKIDRHFISGIDHLPRKQHLVRNIVNIAHVLGVRVIAEGIETEAEFLSCREFGVDL
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
VQGWLIAKPTVFTSELPESFPHLNRVGVARRNSQTLDEILIRREIERLPTVFEHDSVDSV
HHHHHHCCCCHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCHHHH
FELFRRNPQQAFFPVLNANGEPRGVINEYHLKEYIYRPFGRDLLKNKIYERTISHFVDPA
HHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
PIVGLDADADQLMNMFASMGGMGGSACIILTENMRYAGIVSAASLIKVINEKQLKMAQDQ
CEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC
NPLTALPGNRAIGGFIADSCSDGDETRFFCYCDFDNFKPFNDKYGFNAGDHAITLFSALM
CCCEECCCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
RRYFFAGDCFLGHIGGDDFFIGVRDWSVEELMEILERLLSDFHDDVAGLYSDEDRAAGCM
HHHHHCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
KGQDRNGNERDFALLRCSIGVLTLPKGSIIANPERIGSEIASVKAAAKENEGGLVVRVFG
CCCCCCCCCHHEEEEEEECCEEECCCCCEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEC
EAN
CCC
>Mature Secondary Structure
MQAVALENDVIRRFASGQMFPMAKLVLETAFQPIVEATTGTIFGYESLMRGHDRLGFSSP
CCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCH
LALLDQAAADGELKAFEQMLASRALAKFSTLPDFSSATLFLNLDVRLIPHGDVILDKLVG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHH
HLARAGIPASSICFELSERFDNTSVPEFTSLIARMRKEGFKLAIDDFGAGHGEMKLLCDF
HHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECC
PLDYLKIDRHFISGIDHLPRKQHLVRNIVNIAHVLGVRVIAEGIETEAEFLSCREFGVDL
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
VQGWLIAKPTVFTSELPESFPHLNRVGVARRNSQTLDEILIRREIERLPTVFEHDSVDSV
HHHHHHCCCCHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCHHHH
FELFRRNPQQAFFPVLNANGEPRGVINEYHLKEYIYRPFGRDLLKNKIYERTISHFVDPA
HHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
PIVGLDADADQLMNMFASMGGMGGSACIILTENMRYAGIVSAASLIKVINEKQLKMAQDQ
CEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC
NPLTALPGNRAIGGFIADSCSDGDETRFFCYCDFDNFKPFNDKYGFNAGDHAITLFSALM
CCCEECCCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
RRYFFAGDCFLGHIGGDDFFIGVRDWSVEELMEILERLLSDFHDDVAGLYSDEDRAAGCM
HHHHHCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
KGQDRNGNERDFALLRCSIGVLTLPKGSIIANPERIGSEIASVKAAAKENEGGLVVRVFG
CCCCCCCCCHHEEEEEEECCEEECCCCCEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEC
EAN
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]