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The map label for this gene is yncC [C]

Identifier: 15888133

GI number: 15888133

Start: 788044

End: 788724

Strand: Direct

Name: yncC [C]

Synonym: Atu0791

Alternate gene names: 15888133

Gene position: 788044-788724 (Clockwise)

Preceding gene: 15888131

Following gene: 159184466

Centisome position: 27.73

GC content: 66.52

Gene sequence:

>681_bases
ATGCCCAAGCCAGAAAAAACCACGCCCGAAGACACCATCGCCGCACGCATCAGCCGCACTCTGGCCGAGCGCATCGTTCG
TGGTGAGCTGTCGCCGGGCGAACGTCTGCGGCAGGATCATATCGCCGCCGAATTCGGCGCTTCGCATGTGCCGGTGCGCG
AGGCCTTCCGCCGGCTGGAAGCGCAGGGGCTGGCCGCCAGCATTCCGCGCCGGGGTGTGCGGGTCGCGGATTTCGGGCTC
GACGATGTGCGCGAGGTTGCGGAAATGCGCGCGGCCCTCGAGGTGCTGGCGCTGCGCCACGCTATTCCCAACATGACCCC
TGCCATTCTCGATCAGGCGGAAGCGGCCACCCTTGAAGGCGATAGCGCCGTCGATGTTCAGCATTGGGAGGAGGCCAATC
GTCGTTTCCACCGCCTCATCACCGCGCCCTGCAACATGCCGCGCCTGATGGAGGCCATCGATGGGTTGCATGCGGCGAGC
GCCCGTTTCCTGTTCTCCGCCTGGCGGGCCGGCTGGGAACGCCGCACCGATACCGATCACCGCGCAATCTTGGATGCGCT
TCGTGGCGGCCGCGCCGAGGAGGCGGTGCGCATTCTCGATGGACATGTGCAATGGATTGGCCGCAAGGCGATCCGCACCT
CGTCCGGCTCGGTGCGTGACGCCTTCGCCATCGTTGGATAG

Upstream 100 bases:

>100_bases
TTGGCGAGGAATGGGTTAGCGGCTGCCGGGCTTCGAATATTCGGTTTGACGTCCCTAAAAACCGCTACACAGGGCCGCGG
CATTTGCGTTAAGGGATAAT

Downstream 100 bases:

>100_bases
GGCGGAGCCGTGACCGTCCGCCTGCGGCCCCACCACCTTCTCTGTATGCTGACCTATATCGGCAAGGGCTACACATCGGG
CTTCGTGGAAAATTACGACC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; Transcriptional Regulator Gntr Family; GntR Family Regulatory Protein; GntR-Family Transcriptional Regulator; GntR Domain-Containing Protein; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; GntR Family Regulatory; Biotin Regulatory Protein BioR; Transcription Regulator Protein; FCD Domain Protein; GntR Domain Protein; Transcriptional Regulator Protein; Transcription Regulator; Regulator PutR For Proline Utilization GntR Family; Transcriptional Regulater GntR Family Protein; GntR Family Transcription Regulator Protein; Transcription Regulator AsnC; Regulatory Protein GntR HTH

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MPKPEKTTPEDTIAARISRTLAERIVRGELSPGERLRQDHIAAEFGASHVPVREAFRRLEAQGLAASIPRRGVRVADFGL
DDVREVAEMRAALEVLALRHAIPNMTPAILDQAEAATLEGDSAVDVQHWEEANRRFHRLITAPCNMPRLMEAIDGLHAAS
ARFLFSAWRAGWERRTDTDHRAILDALRGGRAEEAVRILDGHVQWIGRKAIRTSSGSVRDAFAIVG

Sequences:

>Translated_226_residues
MPKPEKTTPEDTIAARISRTLAERIVRGELSPGERLRQDHIAAEFGASHVPVREAFRRLEAQGLAASIPRRGVRVADFGL
DDVREVAEMRAALEVLALRHAIPNMTPAILDQAEAATLEGDSAVDVQHWEEANRRFHRLITAPCNMPRLMEAIDGLHAAS
ARFLFSAWRAGWERRTDTDHRAILDALRGGRAEEAVRILDGHVQWIGRKAIRTSSGSVRDAFAIVG
>Mature_225_residues
PKPEKTTPEDTIAARISRTLAERIVRGELSPGERLRQDHIAAEFGASHVPVREAFRRLEAQGLAASIPRRGVRVADFGLD
DVREVAEMRAALEVLALRHAIPNMTPAILDQAEAATLEGDSAVDVQHWEEANRRFHRLITAPCNMPRLMEAIDGLHAASA
RFLFSAWRAGWERRTDTDHRAILDALRGGRAEEAVRILDGHVQWIGRKAIRTSSGSVRDAFAIVG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081914, Length=190, Percent_Identity=27.3684210526316, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787821, Length=211, Percent_Identity=25.1184834123223, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25044; Mature: 24913

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKPEKTTPEDTIAARISRTLAERIVRGELSPGERLRQDHIAAEFGASHVPVREAFRRLE
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
AQGLAASIPRRGVRVADFGLDDVREVAEMRAALEVLALRHAIPNMTPAILDQAEAATLEG
HHCHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
DSAVDVQHWEEANRRFHRLITAPCNMPRLMEAIDGLHAASARFLFSAWRAGWERRTDTDH
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
RAILDALRGGRAEEAVRILDGHVQWIGRKAIRTSSGSVRDAFAIVG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
>Mature Secondary Structure 
PKPEKTTPEDTIAARISRTLAERIVRGELSPGERLRQDHIAAEFGASHVPVREAFRRLE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
AQGLAASIPRRGVRVADFGLDDVREVAEMRAALEVLALRHAIPNMTPAILDQAEAATLEG
HHCHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
DSAVDVQHWEEANRRFHRLITAPCNMPRLMEAIDGLHAASARFLFSAWRAGWERRTDTDH
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
RAILDALRGGRAEEAVRILDGHVQWIGRKAIRTSSGSVRDAFAIVG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA