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The map label for this gene is yqxC [H]

Identifier: 15888079

GI number: 15888079

Start: 735570

End: 736322

Strand: Reverse

Name: yqxC [H]

Synonym: Atu0736

Alternate gene names: 15888079

Gene position: 736322-735570 (Counterclockwise)

Preceding gene: 15888081

Following gene: 15888078

Centisome position: 25.91

GC content: 61.49

Gene sequence:

>753_bases
ATGTCCAAAACATCTGAAAATGAACGGCTAGACCAGCTTCTTGTGTCGCGTGGCCACTTTGCCAGCCGCTCGCGTGCGCG
CGACGCGGTTTCGCGCGGCACCGTGAGCGTGAACGGCAAAATCGTCACCAAACCGAGCCAGACCGTTGCTGCGAACGTCA
AGATCGCCATCACCGATCCGGCGCAGGCTTACGTCTCGCGCGCCGCCCTGAAGCTCACAGCCGCGCTCGATCATTTCAAG
CTTGATCCGAGGGGCCTTGACTGCCTCGACGTTGGCGCATCGACGGGCGGCTTTACCGAGGTGCTGCTGCATCGCGGCGC
GAAACATGTCGTCGCCATCGATGTCGGCCACGGGCAGATCCATCCAAGGATCGAGAACGATCCGCGCGTCACCAGCCTGG
AAGGGCTGAATGCGCGCTTCCTCACCACTGATGATATCGATGAACGACCCATCGGCTTCATCGTTTCCGATGTGTCCTTC
ATTTCGCTGAAGCTTGCGCTTGCCCCGGCGCTCGAGCTTGCGGAACCGGGTGCTCTGGCGGTTCTGCTCGTCAAGCCGCA
ATTCGAGGCGGGGCGTGATGCCATCAGCAAGGCAGGCCTTCTGAAGGAGCCGGAAACGGCGCCTGCCGTGGCGGCCGAGC
TGGAACGCTGGCTGACCGAGGACATGGGCTGGAAAAGCCTCGGCCTCATTCCCTCGCCAATTTCCGGCGGTGACGGCAAT
GTCGAATTTCTTCTCGGAGGCGAAAAGCCATGA

Upstream 100 bases:

>100_bases
ACCCGCGGCATATTTCTTATGCCTTCCGGAGGGCCTGTGGGGTGGTTCCAGCGATAAATCGCTTGCATCTGCGGGGTTTG
GCGGTCATTGACACGGGATC

Downstream 100 bases:

>100_bases
GCACACAGACCGTCACCATCAAGAGCCTTGGCGCGCAGGGCGATGGCATCGCACACTGTCCCGACGGCCCGGTCTATGTG
CCTTTCGCGCTGCCCGGCGA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSKTSENERLDQLLVSRGHFASRSRARDAVSRGTVSVNGKIVTKPSQTVAANVKIAITDPAQAYVSRAALKLTAALDHFK
LDPRGLDCLDVGASTGGFTEVLLHRGAKHVVAIDVGHGQIHPRIENDPRVTSLEGLNARFLTTDDIDERPIGFIVSDVSF
ISLKLALAPALELAEPGALAVLLVKPQFEAGRDAISKAGLLKEPETAPAVAAELERWLTEDMGWKSLGLIPSPISGGDGN
VEFLLGGEKP

Sequences:

>Translated_250_residues
MSKTSENERLDQLLVSRGHFASRSRARDAVSRGTVSVNGKIVTKPSQTVAANVKIAITDPAQAYVSRAALKLTAALDHFK
LDPRGLDCLDVGASTGGFTEVLLHRGAKHVVAIDVGHGQIHPRIENDPRVTSLEGLNARFLTTDDIDERPIGFIVSDVSF
ISLKLALAPALELAEPGALAVLLVKPQFEAGRDAISKAGLLKEPETAPAVAAELERWLTEDMGWKSLGLIPSPISGGDGN
VEFLLGGEKP
>Mature_249_residues
SKTSENERLDQLLVSRGHFASRSRARDAVSRGTVSVNGKIVTKPSQTVAANVKIAITDPAQAYVSRAALKLTAALDHFKL
DPRGLDCLDVGASTGGFTEVLLHRGAKHVVAIDVGHGQIHPRIENDPRVTSLEGLNARFLTTDDIDERPIGFIVSDVSFI
SLKLALAPALELAEPGALAVLLVKPQFEAGRDAISKAGLLKEPETAPAVAAELERWLTEDMGWKSLGLIPSPISGGDGNV
EFLLGGEKP

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26568; Mature: 26436

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTSENERLDQLLVSRGHFASRSRARDAVSRGTVSVNGKIVTKPSQTVAANVKIAITDP
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEECCEEEECCCCEEEEEEEEEEECH
AQAYVSRAALKLTAALDHFKLDPRGLDCLDVGASTGGFTEVLLHRGAKHVVAIDVGHGQI
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHCCCCEEEEEECCCCEE
HPRIENDPRVTSLEGLNARFLTTDDIDERPIGFIVSDVSFISLKLALAPALELAEPGALA
CCCCCCCCCEEEECCCCEEEEECCCCCCCCCEEEEECHHEEEEHHHHHHHHHHCCCCCEE
VLLVKPQFEAGRDAISKAGLLKEPETAPAVAAELERWLTEDMGWKSLGLIPSPISGGDGN
EEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VEFLLGGEKP
EEEEECCCCC
>Mature Secondary Structure 
SKTSENERLDQLLVSRGHFASRSRARDAVSRGTVSVNGKIVTKPSQTVAANVKIAITDP
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEECCEEEECCCCEEEEEEEEEEECH
AQAYVSRAALKLTAALDHFKLDPRGLDCLDVGASTGGFTEVLLHRGAKHVVAIDVGHGQI
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHCCCCEEEEEECCCCEE
HPRIENDPRVTSLEGLNARFLTTDDIDERPIGFIVSDVSFISLKLALAPALELAEPGALA
CCCCCCCCCEEEECCCCEEEEECCCCCCCCCEEEEECHHEEEEHHHHHHHHHHCCCCCEE
VLLVKPQFEAGRDAISKAGLLKEPETAPAVAAELERWLTEDMGWKSLGLIPSPISGGDGN
EEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VEFLLGGEKP
EEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]