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The map label for this gene is yciR [C]

Identifier: 15888045

GI number: 15888045

Start: 701073

End: 702425

Strand: Direct

Name: yciR [C]

Synonym: Atu0701

Alternate gene names: 15888045

Gene position: 701073-702425 (Clockwise)

Preceding gene: 15888044

Following gene: 159184427

Centisome position: 24.67

GC content: 61.35

Gene sequence:

>1353_bases
ATGAAACGGGCAGAGCCGCAATCGTTGCAGGTCAGCCAGAACGAGCTGCAGGCGATGGCCTACAGTGATCCGCTGACGGG
GCTCGGCAACCGCTACCGTCTGCGGGACAAGATTCGCATGCTCGCCAGTGAACGATCCAGCGATCCGGCACCCTTTACGG
TCGGCATTGCCAATATCGACGGTTTCAAACCCATCAACGATCTCTTCGGCGTCCAGGCGGGTGACGAAATCCTGTGCCAG
GTGGCGCACCGGCTGAAGGCCTGCATTCCCGATGGCGCCATCGTGACGCGCCATGACGGCGACGAATTCGCCTTCGTGCT
GCCGCTGATTTTCGAGCGCATCGGCGCGGAGCGCATTGGCAACATGATCAAGGACGTGCTGTCGGCCCCTTACGATCTCG
GCGATCGCAATGTCCGCCTGTCCTCCTCTTTCGGTTTCGCCATTTATCCCTTCGCCGGTGATGAATACGAGGATCTGCTG
AAAAGCGCCGAGACCGCGCTTTACCGCTCGAAGCGTCGCGGCCGCGGCCAGATCACCGTCTATTCGCGTGAGATCGCGCA
GGAAATGAAGCGCGCCACGCAGCTGGAACAGGCGCTCAGAAACGCGATCATCACCGATGCGATCGACGTGCATTTCCAGC
CGATCGTTCGGCTGGAGGAGGCGAAGGTCATCGGTTTCGAGGCGCTCGCCCGCTGGAACGATCCCGATCTCGGCTTCGTG
TCGCCCGCAGTCTTCGTGCCGCTAGCCGAAGAGCGCGGTTTCATCGATGCGCTGTCGGAAGCCCTGCTGCGCAAAGCGGC
GGAAGCGGCCCTGTTCTGGCCGCGTGAGCTGTTCCTGTCCTTCAACCTGTCTTCCGCGCAATTGATGGACCCGAGCACAT
CGGACAATATTCTCTCCATTCTCTCGCGTGTCGGCCTCGATCCGCACCGGCTGGAGCTGGAAATCACCGAAACGGCGGTC
ATGACGTCAGCCGATACCGCGCAGCGCATCATCAGCGAATTGCAGAGTGCCGGCGTTCGCATCTCGCTCGACGATTTCGG
CACCGGCCAGTCGAGCCTCGGCCGCCTGCGTGACTTCACCTTCGACAAGGTGAAGATCGACCGCGCCTTCGTCTCGCGCA
TCAGCAGCGACCGCCCCTCCGAACACATCATCAAGGCCATCGTCGCCATGTGCGAGGGGCTTGATCTCGAGGTTGTGGCC
GAGGGGATCGAGGAGCGGGTGGAAGAAGAAAAACTGCGTGCGCTTGGCTGCGCCATGGGGCAGGGCTATTTCTACGGCCG
CCCCGTCGACGCTGCGGCAACCCAGCGTTACCTGCACGAGAATTATCGCGAGATATTGTCGGATATTTCCTGA

Upstream 100 bases:

>100_bases
GGCTGCAGGCCTGAAATTTCCATTGTCGGGAGGCTATGGCTTTTTTAATACTTGCCCTGCATTGTGAGCGCGGTCGACAC
AGGATTCACGAGATGCAGGA

Downstream 100 bases:

>100_bases
TGTAACATAGCTTTGCCGCAACGTTTGCTGATCATTCCGTTGCGTTGTCTAGCCAAGCCGAGCACTATATGTGCCGGCAC
ATCCCCAACCCTCATTCCTG

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MKRAEPQSLQVSQNELQAMAYSDPLTGLGNRYRLRDKIRMLASERSSDPAPFTVGIANIDGFKPINDLFGVQAGDEILCQ
VAHRLKACIPDGAIVTRHDGDEFAFVLPLIFERIGAERIGNMIKDVLSAPYDLGDRNVRLSSSFGFAIYPFAGDEYEDLL
KSAETALYRSKRRGRGQITVYSREIAQEMKRATQLEQALRNAIITDAIDVHFQPIVRLEEAKVIGFEALARWNDPDLGFV
SPAVFVPLAEERGFIDALSEALLRKAAEAALFWPRELFLSFNLSSAQLMDPSTSDNILSILSRVGLDPHRLELEITETAV
MTSADTAQRIISELQSAGVRISLDDFGTGQSSLGRLRDFTFDKVKIDRAFVSRISSDRPSEHIIKAIVAMCEGLDLEVVA
EGIEERVEEEKLRALGCAMGQGYFYGRPVDAAATQRYLHENYREILSDIS

Sequences:

>Translated_450_residues
MKRAEPQSLQVSQNELQAMAYSDPLTGLGNRYRLRDKIRMLASERSSDPAPFTVGIANIDGFKPINDLFGVQAGDEILCQ
VAHRLKACIPDGAIVTRHDGDEFAFVLPLIFERIGAERIGNMIKDVLSAPYDLGDRNVRLSSSFGFAIYPFAGDEYEDLL
KSAETALYRSKRRGRGQITVYSREIAQEMKRATQLEQALRNAIITDAIDVHFQPIVRLEEAKVIGFEALARWNDPDLGFV
SPAVFVPLAEERGFIDALSEALLRKAAEAALFWPRELFLSFNLSSAQLMDPSTSDNILSILSRVGLDPHRLELEITETAV
MTSADTAQRIISELQSAGVRISLDDFGTGQSSLGRLRDFTFDKVKIDRAFVSRISSDRPSEHIIKAIVAMCEGLDLEVVA
EGIEERVEEEKLRALGCAMGQGYFYGRPVDAAATQRYLHENYREILSDIS
>Mature_450_residues
MKRAEPQSLQVSQNELQAMAYSDPLTGLGNRYRLRDKIRMLASERSSDPAPFTVGIANIDGFKPINDLFGVQAGDEILCQ
VAHRLKACIPDGAIVTRHDGDEFAFVLPLIFERIGAERIGNMIKDVLSAPYDLGDRNVRLSSSFGFAIYPFAGDEYEDLL
KSAETALYRSKRRGRGQITVYSREIAQEMKRATQLEQALRNAIITDAIDVHFQPIVRLEEAKVIGFEALARWNDPDLGFV
SPAVFVPLAEERGFIDALSEALLRKAAEAALFWPRELFLSFNLSSAQLMDPSTSDNILSILSRVGLDPHRLELEITETAV
MTSADTAQRIISELQSAGVRISLDDFGTGQSSLGRLRDFTFDKVKIDRAFVSRISSDRPSEHIIKAIVAMCEGLDLEVVA
EGIEERVEEEKLRALGCAMGQGYFYGRPVDAAATQRYLHENYREILSDIS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=429, Percent_Identity=30.7692307692308, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI87081921, Length=424, Percent_Identity=29.9528301886792, Blast_Score=195, Evalue=6e-51,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=36.7768595041322, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=33.6065573770492, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI226510982, Length=425, Percent_Identity=26.1176470588235, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1787055, Length=410, Percent_Identity=28.0487804878049, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1786507, Length=221, Percent_Identity=30.7692307692308, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=31.0483870967742, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI87081980, Length=222, Percent_Identity=31.981981981982, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=27.0161290322581, Blast_Score=118, Evalue=9e-28,
Organism=Escherichia coli, GI87082096, Length=260, Percent_Identity=30.3846153846154, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1788849, Length=266, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788381, Length=458, Percent_Identity=24.6724890829694, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1787410, Length=238, Percent_Identity=27.3109243697479, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=177, Percent_Identity=34.4632768361582, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789650, Length=431, Percent_Identity=20.4176334106729, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=34.9693251533742, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=28.8235294117647, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=29.4797687861272, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787802, Length=140, Percent_Identity=31.4285714285714, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=30.1775147928994, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=30.4597701149425, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 50086; Mature: 50086

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAEPQSLQVSQNELQAMAYSDPLTGLGNRYRLRDKIRMLASERSSDPAPFTVGIANID
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
GFKPINDLFGVQAGDEILCQVAHRLKACIPDGAIVTRHDGDEFAFVLPLIFERIGAERIG
CCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCHHHHH
NMIKDVLSAPYDLGDRNVRLSSSFGFAIYPFAGDEYEDLLKSAETALYRSKRRGRGQITV
HHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
YSREIAQEMKRATQLEQALRNAIITDAIDVHFQPIVRLEEAKVIGFEALARWNDPDLGFV
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCCCCCCCC
SPAVFVPLAEERGFIDALSEALLRKAAEAALFWPRELFLSFNLSSAQLMDPSTSDNILSI
CCHHEEEEHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHEEECCCCCEECCCCCCHHHHHH
LSRVGLDPHRLELEITETAVMTSADTAQRIISELQSAGVRISLDDFGTGQSSLGRLRDFT
HHHCCCCCCEEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCC
FDKVKIDRAFVSRISSDRPSEHIIKAIVAMCEGLDLEVVAEGIEERVEEEKLRALGCAMG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
QGYFYGRPVDAAATQRYLHENYREILSDIS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRAEPQSLQVSQNELQAMAYSDPLTGLGNRYRLRDKIRMLASERSSDPAPFTVGIANID
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
GFKPINDLFGVQAGDEILCQVAHRLKACIPDGAIVTRHDGDEFAFVLPLIFERIGAERIG
CCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCHHHHH
NMIKDVLSAPYDLGDRNVRLSSSFGFAIYPFAGDEYEDLLKSAETALYRSKRRGRGQITV
HHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
YSREIAQEMKRATQLEQALRNAIITDAIDVHFQPIVRLEEAKVIGFEALARWNDPDLGFV
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCCCCCCCCC
SPAVFVPLAEERGFIDALSEALLRKAAEAALFWPRELFLSFNLSSAQLMDPSTSDNILSI
CCHHEEEEHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHEEECCCCCEECCCCCCHHHHHH
LSRVGLDPHRLELEITETAVMTSADTAQRIISELQSAGVRISLDDFGTGQSSLGRLRDFT
HHHCCCCCCEEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCC
FDKVKIDRAFVSRISSDRPSEHIIKAIVAMCEGLDLEVVAEGIEERVEEEKLRALGCAMG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
QGYFYGRPVDAAATQRYLHENYREILSDIS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]