Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15887994
Identifier: 15887994
GI number: 15887994
Start: 644810
End: 645376
Strand: Reverse
Name: 15887994
Synonym: Atu0652
Alternate gene names: NA
Gene position: 645376-644810 (Counterclockwise)
Preceding gene: 15887996
Following gene: 159184405
Centisome position: 22.71
GC content: 62.43
Gene sequence:
>567_bases ATGACCAAGACCGTTCTGAAGCCCGACTGGGCCGTCGCCACACTCAGGTTAGACCCGGCACGTTTTCCGCAACAGGTCAC CTATGGAAAAGCCAATGGCGCGACTGATGTCGCCGTCACTCTCGATGAACGGGGCGCCGTTCTGAGAAAGGTTCTCACCT CTTCCGGCCTGCCTTTATCCTTCGCTTTGCCAGCCCGCGCCTTCAAGGGTGTTGCCGCCCGCGCCATCGACCATGGCGAC GGTCAGGTCACCGTGACGCTGGAACTGCACCATGACGATCCGGACCTCTGCGTTCCGCTGCTGGTCGCTCATGATCTCTA CGATATCGCCGCCGACTGGCGCAGCTGGTCCGAGGCCTACCGCATTCCCATGCTGATGGTGGAAGCCGATGGCGTTGCCC GCCCGCTGGAAGAACATCTCGGCAAGGTACGAACCCAGAATACCCGCCCGCGCCGTCGCCATTCCTATTTCGCGGATCGC CGCCCGCGCTTCCTCGTTCGCCGCTCCACCGGCTCGCTCGGCATGAGCATGAAGATCGAGGGCAAGGAAATCATCGCCCG CAGCTGA
Upstream 100 bases:
>100_bases TCTCGAACAGGCGGCAGATATTCTCCTGACATCAGAGGACGAAAAGTCCCAATGAGAAGACCGGAAACCGGCTCTCAGGT AAAACAAGGGTAGAATAAAC
Downstream 100 bases:
>100_bases TCTTCTTCAGTCCAGAACATAAAAGCCCGGTGCGGATGACGCGACCGGGCTTTTTCGTATTCCCTATTCCCGCAACTTAC GCCAGCAGCAGCGGCAGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MTKTVLKPDWAVATLRLDPARFPQQVTYGKANGATDVAVTLDERGAVLRKVLTSSGLPLSFALPARAFKGVAARAIDHGD GQVTVTLELHHDDPDLCVPLLVAHDLYDIAADWRSWSEAYRIPMLMVEADGVARPLEEHLGKVRTQNTRPRRRHSYFADR RPRFLVRRSTGSLGMSMKIEGKEIIARS
Sequences:
>Translated_188_residues MTKTVLKPDWAVATLRLDPARFPQQVTYGKANGATDVAVTLDERGAVLRKVLTSSGLPLSFALPARAFKGVAARAIDHGD GQVTVTLELHHDDPDLCVPLLVAHDLYDIAADWRSWSEAYRIPMLMVEADGVARPLEEHLGKVRTQNTRPRRRHSYFADR RPRFLVRRSTGSLGMSMKIEGKEIIARS >Mature_187_residues TKTVLKPDWAVATLRLDPARFPQQVTYGKANGATDVAVTLDERGAVLRKVLTSSGLPLSFALPARAFKGVAARAIDHGDG QVTVTLELHHDDPDLCVPLLVAHDLYDIAADWRSWSEAYRIPMLMVEADGVARPLEEHLGKVRTQNTRPRRRHSYFADRR PRFLVRRSTGSLGMSMKIEGKEIIARS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20939; Mature: 20808
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTVLKPDWAVATLRLDPARFPQQVTYGKANGATDVAVTLDERGAVLRKVLTSSGLPLS CCCCCCCCCCEEEEEEECHHHCCCCEECCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEE FALPARAFKGVAARAIDHGDGQVTVTLELHHDDPDLCVPLLVAHDLYDIAADWRSWSEAY EECCHHHHHHHHHHEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RIPMLMVEADGVARPLEEHLGKVRTQNTRPRRRHSYFADRRPRFLVRRSTGSLGMSMKIE CCCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEEC GKEIIARS CCEEEECC >Mature Secondary Structure TKTVLKPDWAVATLRLDPARFPQQVTYGKANGATDVAVTLDERGAVLRKVLTSSGLPLS CCCCCCCCCEEEEEEECHHHCCCCEECCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEE FALPARAFKGVAARAIDHGDGQVTVTLELHHDDPDLCVPLLVAHDLYDIAADWRSWSEAY EECCHHHHHHHHHHEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RIPMLMVEADGVARPLEEHLGKVRTQNTRPRRRHSYFADRRPRFLVRRSTGSLGMSMKIE CCCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCEEEEEC GKEIIARS CCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA