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The map label for this gene is 15887953

Identifier: 15887953

GI number: 15887953

Start: 594823

End: 596238

Strand: Direct

Name: 15887953

Synonym: Atu0608

Alternate gene names: NA

Gene position: 594823-596238 (Clockwise)

Preceding gene: 15887950

Following gene: 15887954

Centisome position: 20.93

GC content: 63.14

Gene sequence:

>1416_bases
GTGTCGGAAAACAAGATTTTTGCCGGGCCGCGCGTGCGCCGTATTCGTAACGGTCTCGCATTGACGCAGACGGCCATGGC
CGAGGCGCTGGCGATCTCGCCGTCTTACCTCAACCTCATCGAGCGCAACCAGCGGCCGCTGACCGTGCAACTGCTTTTGA
AGCTCGCCTCGGTCTACAAGGTCGATCTGGACGACCTTCAGGGCGAAAGCGCCGGTTCCGCCGGGCAGTTGCGTGAGGTC
TTTGCCGATCCGCTGCTGGTGGGTGAGGTGCCATCACCGCAGGAACTGATCGAGGTTGCCGATGCCGCGCCCAATGCGGC
AAGCGGTGTCCTCAAGCTTTACCGGGCCTATCGGGAACAGGCGCAGCGCCTTTCCGACCTCTCCGATCTTCTGGCGCGGG
AAGGGCATGAGACGGCGCTGTCCTCCACCCGTCTGCCGATCGACGAGGTGCGGCACGTCTTTGAAAACCGGCCGGCTTAT
TTCCATGCCATCGATGCGGCAGCAGAAGAACTGCATAAACAATTATCGACGGGCGATGATCTCGCCTCGGGTTTGCGCGC
CTGGCTACAGAAAAATCATGGCATCGTCGTCAGAACCCTGCCGGTGCACGCCATGCCGAATCTGAGACGGCGTTATGATC
GCCATTCCATGCGGCTGTTTTTGTCCGAGCGCCTCTCCCAGCCGGATCAACTCCGGGAAATGGCGATGGAGACCTGTCTT
CTGGCGCTTCGCGAAGAGATAGGGACGGAACTGGAGGCGCTGGGCCTGAAAGGCGAGGAGGCGCGGCGCATCGCCCGTTT
CGAACTGGCACGTTATGCCGCCCATGCGCTGATGATGCCCTATGGTGCGTTCCTTGCCGCCGCCCAGCGCGCGAAATATG
ACCTCGATGTTCTGCGGTCGCGCTTCAACGTCTCGTTCGAACAGGCCGCCAACCGGCTCGTCAGCCTGCAACGGCCAACG
ACCGCGGCGATCCCGTTTTTCCTGATGGAGATCGACAATGCCGGCAACCGTTTCCGCCTCGCAGGGGCGGGCGGTTTCCC
GAGGGCGCGATTCGGCGGTCTCTGTCCGCGGCTCAATATCCATGCCGCCTTCGCCCAGCCGGGGCAGGTGCTGGTGGAAT
CGGTGGAAATGCCTGACGGTGATGCTTTCCTCACCGTTTCGCGCACGCTGGAAGGTCCGCAGGCGGGTTTCGGCGAAAGG
GTGAGGCGCACGGCCGTGCTTTTAGGCTGCGATCTCGGCCAGGCGGGGGAAACGGTCTATGGCCCGGCCGCCTCTGGTGC
TGCACCCGTCGCCATCGGCCCCTCGTGCCGGCTGTGCGAAAGACAGGGCTGCCTGTCACGGGCCGAAGCGCCGCTCACGC
GCCCGCTCGGGTTGGATGAAATGGTCACCGGCCTTAGTGTTTTCGACTTCCAGTAG

Upstream 100 bases:

>100_bases
TGCGTGACAGGGTGGAGCTGTAAATTTGTAAATTTTGTAAAAGACTGTGGCCTGACGAGTTTGTAACAGACTTGTATGAG
TGACGGGTTGAGGAGAGGAC

Downstream 100 bases:

>100_bases
GCGTTTCGATGCAATTTTTTCTGGCCGGAACACATTTGGTTGAAAATGCTGTGCTGCACATTTCCCGCTTGCTCCCTTTT
GTTTTCCTTTCTAGTCTCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MSENKIFAGPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYKVDLDDLQGESAGSAGQLREV
FADPLLVGEVPSPQELIEVADAAPNAASGVLKLYRAYREQAQRLSDLSDLLAREGHETALSSTRLPIDEVRHVFENRPAY
FHAIDAAAEELHKQLSTGDDLASGLRAWLQKNHGIVVRTLPVHAMPNLRRRYDRHSMRLFLSERLSQPDQLREMAMETCL
LALREEIGTELEALGLKGEEARRIARFELARYAAHALMMPYGAFLAAAQRAKYDLDVLRSRFNVSFEQAANRLVSLQRPT
TAAIPFFLMEIDNAGNRFRLAGAGGFPRARFGGLCPRLNIHAAFAQPGQVLVESVEMPDGDAFLTVSRTLEGPQAGFGER
VRRTAVLLGCDLGQAGETVYGPAASGAAPVAIGPSCRLCERQGCLSRAEAPLTRPLGLDEMVTGLSVFDFQ

Sequences:

>Translated_471_residues
MSENKIFAGPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYKVDLDDLQGESAGSAGQLREV
FADPLLVGEVPSPQELIEVADAAPNAASGVLKLYRAYREQAQRLSDLSDLLAREGHETALSSTRLPIDEVRHVFENRPAY
FHAIDAAAEELHKQLSTGDDLASGLRAWLQKNHGIVVRTLPVHAMPNLRRRYDRHSMRLFLSERLSQPDQLREMAMETCL
LALREEIGTELEALGLKGEEARRIARFELARYAAHALMMPYGAFLAAAQRAKYDLDVLRSRFNVSFEQAANRLVSLQRPT
TAAIPFFLMEIDNAGNRFRLAGAGGFPRARFGGLCPRLNIHAAFAQPGQVLVESVEMPDGDAFLTVSRTLEGPQAGFGER
VRRTAVLLGCDLGQAGETVYGPAASGAAPVAIGPSCRLCERQGCLSRAEAPLTRPLGLDEMVTGLSVFDFQ
>Mature_470_residues
SENKIFAGPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYKVDLDDLQGESAGSAGQLREVF
ADPLLVGEVPSPQELIEVADAAPNAASGVLKLYRAYREQAQRLSDLSDLLAREGHETALSSTRLPIDEVRHVFENRPAYF
HAIDAAAEELHKQLSTGDDLASGLRAWLQKNHGIVVRTLPVHAMPNLRRRYDRHSMRLFLSERLSQPDQLREMAMETCLL
ALREEIGTELEALGLKGEEARRIARFELARYAAHALMMPYGAFLAAAQRAKYDLDVLRSRFNVSFEQAANRLVSLQRPTT
AAIPFFLMEIDNAGNRFRLAGAGGFPRARFGGLCPRLNIHAAFAQPGQVLVESVEMPDGDAFLTVSRTLEGPQAGFGERV
RRTAVLLGCDLGQAGETVYGPAASGAAPVAIGPSCRLCERQGCLSRAEAPLTRPLGLDEMVTGLSVFDFQ

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 51638; Mature: 51507

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENKIFAGPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYK
CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
VDLDDLQGESAGSAGQLREVFADPLLVGEVPSPQELIEVADAAPNAASGVLKLYRAYREQ
CCHHHCCCCCCCCHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AQRLSDLSDLLAREGHETALSSTRLPIDEVRHVFENRPAYFHAIDAAAEELHKQLSTGDD
HHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH
LASGLRAWLQKNHGIVVRTLPVHAMPNLRRRYDRHSMRLFLSERLSQPDQLREMAMETCL
HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LALREEIGTELEALGLKGEEARRIARFELARYAAHALMMPYGAFLAAAQRAKYDLDVLRS
HHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RFNVSFEQAANRLVSLQRPTTAAIPFFLMEIDNAGNRFRLAGAGGFPRARFGGLCPRLNI
HHCCCHHHHHHHHHHCCCCCHHHHCEEEEEECCCCCEEEEECCCCCCCHHHCCCCCCCEE
HAAFAQPGQVLVESVEMPDGDAFLTVSRTLEGPQAGFGERVRRTAVLLGCDLGQAGETVY
EEECCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHEECCCCCCCCEEE
GPAASGAAPVAIGPSCRLCERQGCLSRAEAPLTRPLGLDEMVTGLSVFDFQ
CCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHCCCC
>Mature Secondary Structure 
SENKIFAGPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYK
CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
VDLDDLQGESAGSAGQLREVFADPLLVGEVPSPQELIEVADAAPNAASGVLKLYRAYREQ
CCHHHCCCCCCCCHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AQRLSDLSDLLAREGHETALSSTRLPIDEVRHVFENRPAYFHAIDAAAEELHKQLSTGDD
HHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH
LASGLRAWLQKNHGIVVRTLPVHAMPNLRRRYDRHSMRLFLSERLSQPDQLREMAMETCL
HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LALREEIGTELEALGLKGEEARRIARFELARYAAHALMMPYGAFLAAAQRAKYDLDVLRS
HHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RFNVSFEQAANRLVSLQRPTTAAIPFFLMEIDNAGNRFRLAGAGGFPRARFGGLCPRLNI
HHCCCHHHHHHHHHHCCCCCHHHHCEEEEEECCCCCEEEEECCCCCCCHHHCCCCCCCEE
HAAFAQPGQVLVESVEMPDGDAFLTVSRTLEGPQAGFGERVRRTAVLLGCDLGQAGETVY
EEECCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHEECCCCCCCCEEE
GPAASGAAPVAIGPSCRLCERQGCLSRAEAPLTRPLGLDEMVTGLSVFDFQ
CCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]