Click here to switch to the map view.

The map label for this gene is motD [H]

Identifier: 15887916

GI number: 15887916

Start: 556015

End: 557364

Strand: Direct

Name: motD [H]

Synonym: Atu0571

Alternate gene names: 15887916

Gene position: 556015-557364 (Clockwise)

Preceding gene: 15887915

Following gene: 159184371

Centisome position: 19.57

GC content: 61.11

Gene sequence:

>1350_bases
ATGATCGACGCAACCATCAACGCGATAGTGAACGCGCCACCACCCGACGCCCGCGCTAGCGGCGCAAATGCAAGGGACGA
CGCCAAGGGCGGCAGCTTCGGCGATGCACTTTCCACGGTCCGGGACGAACGCTCGCCGCAATCGCGGCATCAGGATGCGG
GTTCGGCCAAGGAGCAGCACGCAAAACCCGATGACGAGCCTGAAAAGACGGATGCTCCGGTCAAACGCCCCCCAACTTTT
CTGAATGCGATCGCTCGCGACCATGCCGGCGAACCCCGTAACCACGAGACGGTGGCCGAGTTTCAGAACGCTCTGAAAAC
GGTGCGCACCTCGGCTGACAACGGCAAAACCGGCAAGAAGCTCAAGGATGAGACGGACAGGGATGCCGAGACGGCGGCGG
ACACGATTGATCCGAAGCTCGCGGAGCTCAAGACCGTCATGATCGGTGCCGGCGATATTGCGACAGCCAAGTCGCCGCTT
GAGGAAATTGCGCAGGCGATTGCCGGCAAGGTGGATTCGGTGAAATCCGACAGGGCCGAACCCGTGCACGGCAAGGCGGA
ACCTTCGCTGAAGGATATGCCCACGAAGATGGAACTCGCCAAAAACGAGACGGACACCGGCGCGGAAGGCGGCAACGATG
CCTCGGCCTTCCGTTTCTCCTCCTCCCGCTCGGGCACGGCCCGCGCGCTTGATATGGGCACGGTTCAGCGTGAAGGCCGT
GTCGAGTTCGATGTCCGGGACAGCAGCGGCAAAGTGGCCGATAACGTCACTGTTGTCGATTCGCGGCGGTTCATCGGCCT
GGCGCCTTCGACCAATGCTTCGGCTCTGACCGGCCTCATCGTCAATGATCCGGAATGGGTCAGCGCCATGCAGCCGGGTT
CTTCGCTGTCCAATGCGGCGGCCCAGAGCAGCACGGGCAAAGTCGTGCATACACTGAAGCTGCACATGACGCCGATCGAA
CTCGGATCGGTGACGATGTCGCTGCGCCTTGCGGGTGATGAGCTTGCCGTTCACATGACGGTGGAGAGCATGGCGGCCTA
TAAAAAGCTCCAGGACGACAGCAAGAGCATCCTTGAAGGTCTCAAGGCGCAGGGTCTGACGGTCGACAACATCACCATCA
GCATCGCTTCTTCCGACAAGAGTGACCAAACGGGCACACAAGGCAACAATCAGCAAAATCAGCAGGCGCAGCAGCAGGGC
CAGCAGGCCTCCGCTGGGCGCAACCGTGACGAGTCCGGCGCACGGGATGGCCGGCAAGGCAATGGTGATAATTTGGGGGT
GCATAATGAAGGCATGGATGGCGCTCTCGGCTCTGGCCGTTCTTCTGCTGACAATGGCGTCTACCTCTGA

Upstream 100 bases:

>100_bases
AGGCGGACGATGCGGGCGAAAATGTCCGGCAACTCGTGACGAGTGGCCGCAGCAAGCTCGATGAAATCGACAGCCTGTTG
AAGAAAGGCGAGGGGGCACC

Downstream 100 bases:

>100_bases
AAACGCGTCGGCTTCGGCAACATCAGGTGTCTGTGAAAGAGAGATCCAGTCGGCCGCCCGCAAATATGGCGTGCCGGAAG
GAATTCTCTATTCCGTCGGC

Product: chemotaxis MotD protein

Products: NA

Alternate protein names: Motility protein D [H]

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MIDATINAIVNAPPPDARASGANARDDAKGGSFGDALSTVRDERSPQSRHQDAGSAKEQHAKPDDEPEKTDAPVKRPPTF
LNAIARDHAGEPRNHETVAEFQNALKTVRTSADNGKTGKKLKDETDRDAETAADTIDPKLAELKTVMIGAGDIATAKSPL
EEIAQAIAGKVDSVKSDRAEPVHGKAEPSLKDMPTKMELAKNETDTGAEGGNDASAFRFSSSRSGTARALDMGTVQREGR
VEFDVRDSSGKVADNVTVVDSRRFIGLAPSTNASALTGLIVNDPEWVSAMQPGSSLSNAAAQSSTGKVVHTLKLHMTPIE
LGSVTMSLRLAGDELAVHMTVESMAAYKKLQDDSKSILEGLKAQGLTVDNITISIASSDKSDQTGTQGNNQQNQQAQQQG
QQASAGRNRDESGARDGRQGNGDNLGVHNEGMDGALGSGRSSADNGVYL

Sequences:

>Translated_449_residues
MIDATINAIVNAPPPDARASGANARDDAKGGSFGDALSTVRDERSPQSRHQDAGSAKEQHAKPDDEPEKTDAPVKRPPTF
LNAIARDHAGEPRNHETVAEFQNALKTVRTSADNGKTGKKLKDETDRDAETAADTIDPKLAELKTVMIGAGDIATAKSPL
EEIAQAIAGKVDSVKSDRAEPVHGKAEPSLKDMPTKMELAKNETDTGAEGGNDASAFRFSSSRSGTARALDMGTVQREGR
VEFDVRDSSGKVADNVTVVDSRRFIGLAPSTNASALTGLIVNDPEWVSAMQPGSSLSNAAAQSSTGKVVHTLKLHMTPIE
LGSVTMSLRLAGDELAVHMTVESMAAYKKLQDDSKSILEGLKAQGLTVDNITISIASSDKSDQTGTQGNNQQNQQAQQQG
QQASAGRNRDESGARDGRQGNGDNLGVHNEGMDGALGSGRSSADNGVYL
>Mature_449_residues
MIDATINAIVNAPPPDARASGANARDDAKGGSFGDALSTVRDERSPQSRHQDAGSAKEQHAKPDDEPEKTDAPVKRPPTF
LNAIARDHAGEPRNHETVAEFQNALKTVRTSADNGKTGKKLKDETDRDAETAADTIDPKLAELKTVMIGAGDIATAKSPL
EEIAQAIAGKVDSVKSDRAEPVHGKAEPSLKDMPTKMELAKNETDTGAEGGNDASAFRFSSSRSGTARALDMGTVQREGR
VEFDVRDSSGKVADNVTVVDSRRFIGLAPSTNASALTGLIVNDPEWVSAMQPGSSLSNAAAQSSTGKVVHTLKLHMTPIE
LGSVTMSLRLAGDELAVHMTVESMAAYKKLQDDSKSILEGLKAQGLTVDNITISIASSDKSDQTGTQGNNQQNQQAQQQG
QQASAGRNRDESGARDGRQGNGDNLGVHNEGMDGALGSGRSSADNGVYL

Specific function: Required for the rotation of the flagellar motor. Has a positive effect as flagellar rotation increases when an excess of motd is present [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm. Note=Associated with the inner surface of the motor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021136 [H]

Pfam domain/function: PF02120 Flg_hook [H]

EC number: NA

Molecular weight: Translated: 47176; Mature: 47176

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDATINAIVNAPPPDARASGANARDDAKGGSFGDALSTVRDERSPQSRHQDAGSAKEQH
CCCCEEEHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHC
AKPDDEPEKTDAPVKRPPTFLNAIARDHAGEPRNHETVAEFQNALKTVRTSADNGKTGKK
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
LKDETDRDAETAADTIDPKLAELKTVMIGAGDIATAKSPLEEIAQAIAGKVDSVKSDRAE
CCCCCCCHHHHHHHHCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCCCC
PVHGKAEPSLKDMPTKMELAKNETDTGAEGGNDASAFRFSSSRSGTARALDMGTVQREGR
CCCCCCCCCHHHCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCC
VEFDVRDSSGKVADNVTVVDSRRFIGLAPSTNASALTGLIVNDPEWVSAMQPGSSLSNAA
EEEEEECCCCCCCCCEEEEECCEEEEECCCCCCCCEEEEEECCHHHHHHCCCCCHHHHHH
AQSSTGKVVHTLKLHMTPIELGSVTMSLRLAGDELAVHMTVESMAAYKKLQDDSKSILEG
HHCCCCCEEEEEEEEECEEECCCEEEEEEECCCEEEEEEEHHHHHHHHHHHCHHHHHHHH
LKAQGLTVDNITISIASSDKSDQTGTQGNNQQNQQAQQQGQQASAGRNRDESGARDGRQG
HHHCCEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
NGDNLGVHNEGMDGALGSGRSSADNGVYL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIDATINAIVNAPPPDARASGANARDDAKGGSFGDALSTVRDERSPQSRHQDAGSAKEQH
CCCCEEEHEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHC
AKPDDEPEKTDAPVKRPPTFLNAIARDHAGEPRNHETVAEFQNALKTVRTSADNGKTGKK
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
LKDETDRDAETAADTIDPKLAELKTVMIGAGDIATAKSPLEEIAQAIAGKVDSVKSDRAE
CCCCCCCHHHHHHHHCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCCCC
PVHGKAEPSLKDMPTKMELAKNETDTGAEGGNDASAFRFSSSRSGTARALDMGTVQREGR
CCCCCCCCCHHHCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCC
VEFDVRDSSGKVADNVTVVDSRRFIGLAPSTNASALTGLIVNDPEWVSAMQPGSSLSNAA
EEEEEECCCCCCCCCEEEEECCEEEEECCCCCCCCEEEEEECCHHHHHHCCCCCHHHHHH
AQSSTGKVVHTLKLHMTPIELGSVTMSLRLAGDELAVHMTVESMAAYKKLQDDSKSILEG
HHCCCCCEEEEEEEEECEEECCCEEEEEEECCCEEEEEEEHHHHHHHHHHHCHHHHHHHH
LKAQGLTVDNITISIASSDKSDQTGTQGNNQQNQQAQQQGQQASAGRNRDESGARDGRQG
HHHCCEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
NGDNLGVHNEGMDGALGSGRSSADNGVYL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9335288 [H]