Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is phnM [H]
Identifier: 15887522
GI number: 15887522
Start: 172980
End: 174116
Strand: Reverse
Name: phnM [H]
Synonym: Atu0169
Alternate gene names: 15887522
Gene position: 174116-172980 (Counterclockwise)
Preceding gene: 159184195
Following gene: 159184194
Centisome position: 6.13
GC content: 61.13
Gene sequence:
>1137_bases ATGACCGAGCACGCCCTGTCCAATGCCCGTATCGTTTTGGAAGACGATATTATTTTGGGATCCGTTCTGATCCGTGACGG CAAGATTGCCGATATCAGCGAAGGTGCTTCCAAAACCGGAGAAGACCTCGAAGGCGATTTCCTTATCCCCGGTCTGGTGG AACTGCATACCGACCATCTGGAACAGCACTACTCACCACGTCCGGGCGTGATCTGGGACAAGATCGCCGCCATTCAGGCC CATGATGCACAGGTTGCGTCGTCCGGCATCACCACCGTGTTCGATTGCCTGCGGCTCGGCTCGGACGAGGATGGCGGTTT CAAAAAGGGCGAAATGCGCGAAATGGCTGACGCCATCGAGGCGGCAGCGGATCAGAACCGCCTGCGTGCGGACCACCTGC TGCATCTGCGCTGTGAGGTCGCTTCCGCCGATGTGCTTGAGCATTTCGAAGACTTCGAAACCGATCCGCGCGTGCGGCTG ATTTCGCTGATGGATCACTCCCCGGGCCAGCGCCAGTTCCAGTCGATGGACCAGTATATCTTCTATTATCAGAAGAAGCG CGGATTGAGCGACGAGGCTTTTGCCGAATTCGTGCGCCGCCGACAGGCCGCATCGGCCGAATATTCCGCCAAGCACCGCG ATTATCTGGCGGCCAGCTGCGCCAAGCGCGGCATCACGGTCGCAAGCCATGACGACGCGACCGAAGCGCATGTGGGCGAA GCCATCGGTCACGGCGTTAAACTGGCGGAATTTCCCACCAGCGTCGAGGCTGCGAAAGCTTCGCACAGCGCCGGCATGAG CGTCCTGATGGGTGCGCCGAACATCGTTCGCGGCAAGTCCCATTCCGGCAATATCGCCGCCCGCGATCTGGCCGAGATCG GCGTGCTGGATGTTCTTTCTTCCGATTACGTGCCGTTCAGCCTGCTCTTCGCGCCGTTCCTGCTCGCCGATCAGGTGGAA GCTATCAGCCTGTCGGAAGCACTGCGCATGGTCACCGCCACGCCGGCACGCACGGTCGGCCTTGTCGACCGTGGCCGTAT CGCGACCGGGTTGCGGGCCGATCTGGTGCGGGTTCATCGCGAGGATGGTGTGCCGGTTGCTCGTTCGGTCTGGCGCCAGG GCAAGCGCGTGGCATGA
Upstream 100 bases:
>100_bases TTTCCGGCCTCGCTTTATTCATTGAAGAAACGCGCGGCGCGCCATTTACCGTTCATCGCTGGCACCCGCTTGGCCAGCAG CCAAAGAAAGATGCGAACCC
Downstream 100 bases:
>100_bases CCACCGGTGGAGAAGATAGCCGGCGCACATTGTCGCCCGGCACGATGATCGTGATTGTCGGCCCGAGCGGGGCCGGCAAG GACACGCTGATGGACTATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 378; Mature: 377
Protein sequence:
>378_residues MTEHALSNARIVLEDDIILGSVLIRDGKIADISEGASKTGEDLEGDFLIPGLVELHTDHLEQHYSPRPGVIWDKIAAIQA HDAQVASSGITTVFDCLRLGSDEDGGFKKGEMREMADAIEAAADQNRLRADHLLHLRCEVASADVLEHFEDFETDPRVRL ISLMDHSPGQRQFQSMDQYIFYYQKKRGLSDEAFAEFVRRRQAASAEYSAKHRDYLAASCAKRGITVASHDDATEAHVGE AIGHGVKLAEFPTSVEAAKASHSAGMSVLMGAPNIVRGKSHSGNIAARDLAEIGVLDVLSSDYVPFSLLFAPFLLADQVE AISLSEALRMVTATPARTVGLVDRGRIATGLRADLVRVHREDGVPVARSVWRQGKRVA
Sequences:
>Translated_378_residues MTEHALSNARIVLEDDIILGSVLIRDGKIADISEGASKTGEDLEGDFLIPGLVELHTDHLEQHYSPRPGVIWDKIAAIQA HDAQVASSGITTVFDCLRLGSDEDGGFKKGEMREMADAIEAAADQNRLRADHLLHLRCEVASADVLEHFEDFETDPRVRL ISLMDHSPGQRQFQSMDQYIFYYQKKRGLSDEAFAEFVRRRQAASAEYSAKHRDYLAASCAKRGITVASHDDATEAHVGE AIGHGVKLAEFPTSVEAAKASHSAGMSVLMGAPNIVRGKSHSGNIAARDLAEIGVLDVLSSDYVPFSLLFAPFLLADQVE AISLSEALRMVTATPARTVGLVDRGRIATGLRADLVRVHREDGVPVARSVWRQGKRVA >Mature_377_residues TEHALSNARIVLEDDIILGSVLIRDGKIADISEGASKTGEDLEGDFLIPGLVELHTDHLEQHYSPRPGVIWDKIAAIQAH DAQVASSGITTVFDCLRLGSDEDGGFKKGEMREMADAIEAAADQNRLRADHLLHLRCEVASADVLEHFEDFETDPRVRLI SLMDHSPGQRQFQSMDQYIFYYQKKRGLSDEAFAEFVRRRQAASAEYSAKHRDYLAASCAKRGITVASHDDATEAHVGEA IGHGVKLAEFPTSVEAAKASHSAGMSVLMGAPNIVRGKSHSGNIAARDLAEIGVLDVLSSDYVPFSLLFAPFLLADQVEA ISLSEALRMVTATPARTVGLVDRGRIATGLRADLVRVHREDGVPVARSVWRQGKRVA
Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known [H]
COG id: COG3454
COG function: function code P; Metal-dependent hydrolase involved in phosphonate metabolism
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790533, Length=375, Percent_Identity=47.7333333333333, Blast_Score=343, Evalue=1e-95,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 - InterPro: IPR012696 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: NA
Molecular weight: Translated: 41201; Mature: 41070
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEHALSNARIVLEDDIILGSVLIRDGKIADISEGASKTGEDLEGDFLIPGLVELHTDHL CCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHH EQHYSPRPGVIWDKIAAIQAHDAQVASSGITTVFDCLRLGSDEDGGFKKGEMREMADAIE HHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH AAADQNRLRADHLLHLRCEVASADVLEHFEDFETDPRVRLISLMDHSPGQRQFQSMDQYI HHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH FYYQKKRGLSDEAFAEFVRRRQAASAEYSAKHRDYLAASCAKRGITVASHDDATEAHVGE HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHH AIGHGVKLAEFPTSVEAAKASHSAGMSVLMGAPNIVRGKSHSGNIAARDLAEIGVLDVLS HHHCCCEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHC SDYVPFSLLFAPFLLADQVEAISLSEALRMVTATPARTVGLVDRGRIATGLRADLVRVHR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHH EDGVPVARSVWRQGKRVA CCCCCHHHHHHHCCCCCC >Mature Secondary Structure TEHALSNARIVLEDDIILGSVLIRDGKIADISEGASKTGEDLEGDFLIPGLVELHTDHL CCCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHH EQHYSPRPGVIWDKIAAIQAHDAQVASSGITTVFDCLRLGSDEDGGFKKGEMREMADAIE HHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH AAADQNRLRADHLLHLRCEVASADVLEHFEDFETDPRVRLISLMDHSPGQRQFQSMDQYI HHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH FYYQKKRGLSDEAFAEFVRRRQAASAEYSAKHRDYLAASCAKRGITVASHDDATEAHVGE HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHH AIGHGVKLAEFPTSVEAAKASHSAGMSVLMGAPNIVRGKSHSGNIAARDLAEIGVLDVLS HHHCCCEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHC SDYVPFSLLFAPFLLADQVEAISLSEALRMVTATPARTVGLVDRGRIATGLRADLVRVHR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHH EDGVPVARSVWRQGKRVA CCCCCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]