Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15887404
Identifier: 15887404
GI number: 15887404
Start: 46716
End: 47681
Strand: Direct
Name: 15887404
Synonym: Atu0046
Alternate gene names: NA
Gene position: 46716-47681 (Clockwise)
Preceding gene: 15887403
Following gene: 15887405
Centisome position: 1.64
GC content: 57.04
Gene sequence:
>966_bases GTGCGCAAAATTCTTCTGGCATTTGTCGTGGCTCTGGCGGTTTCCGCCGTTTCGTCTTCTTATGCCGAGGCCGCGACGGT TGTTCCCCCGGGCAATCGCAATGCCGAACAGCCGGGTGTTCCCGGCGCTTCCGCCCGCAGAACCAAGGCGTCCAACAGCT CTTTCGAACGCAAGTACCAGAAGGTGATCGACCTTTTGTCCTCCGACAAGGCGCTGATCGCCAAGATCAAGTCGACCGCC GGACGCTACGGCATCGATCCAATTCATATGGTCGGCGCGATCGTCGGCGAACACACCTATAATGTCGACGCTTATGACCG TCTGCAGTCCTATTACGTCAAGGCGGCCTCCTATGCCGGTAGCAGTTTCCGCTTCGGCTACAAGGATGAGACGATTGCGC AGTTTCTGACGCATGCGCAATTTTCCAAATGCCAGGCGAAGAAGGATTCCTACAGCCTCTGGAACTGCCGCGAAGATGTC TGGGACGACAGCTTCCGTGGCAAAACAGTCGACGGCGTGGCCTATCCGAACAACCGTTTCAGCGCCGTTTTCTTCCAGCC ATTTTATGCCGGCCAGACCTTCGGCCTCGGCCAGATCAACCCGCTAACAGCGCTGATGCTGTCCGACATGGTGTCGAGAA CCTCCGGTTACGAAAAGCTGGATGAAAACGATGCCACTGCCGTTTATACGGCTATCATGGATCCGGACCGCTCGCTCGCC TTCATGGCAGCCTCCATCCGCAAGTCGATCGACGACTACCGATCGATCGCCGACATGGATATTTCGAAGAATCCTGGTGT GACCTCCACGCTTTATAATGTCGGCGGTTCGCAGCAGCGTGCGGCTGCGCTTGCACAGAAGAACCGCCAACGCGCCGGAG GCGGCGAGCAGCCGCTATTGCCGGAAGAAAATTATTACGGCTGGCTGGTAAACGACCGCATCAAGGATCTGCAGGCGCTT TTGTAG
Upstream 100 bases:
>100_bases TGGGAAGGGCTGCATTCCGGTTGGAACCGCTTTCGTGGAATGATCCGGTTTTCCCGCTTGTCATGCCGGGAAGGGCCGGC TCGAGAAAAGGCAGTCGCTC
Downstream 100 bases:
>100_bases AAAAAGACTATTATCCGCCATATTGTTTCCAAAAAGGAAATAATATTTGGCTGGATGCCGCGATTGACGAGCGACCGCCT CAGCGTCCAATCTATGCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MRKILLAFVVALAVSAVSSSYAEAATVVPPGNRNAEQPGVPGASARRTKASNSSFERKYQKVIDLLSSDKALIAKIKSTA GRYGIDPIHMVGAIVGEHTYNVDAYDRLQSYYVKAASYAGSSFRFGYKDETIAQFLTHAQFSKCQAKKDSYSLWNCREDV WDDSFRGKTVDGVAYPNNRFSAVFFQPFYAGQTFGLGQINPLTALMLSDMVSRTSGYEKLDENDATAVYTAIMDPDRSLA FMAASIRKSIDDYRSIADMDISKNPGVTSTLYNVGGSQQRAAALAQKNRQRAGGGEQPLLPEENYYGWLVNDRIKDLQAL L
Sequences:
>Translated_321_residues MRKILLAFVVALAVSAVSSSYAEAATVVPPGNRNAEQPGVPGASARRTKASNSSFERKYQKVIDLLSSDKALIAKIKSTA GRYGIDPIHMVGAIVGEHTYNVDAYDRLQSYYVKAASYAGSSFRFGYKDETIAQFLTHAQFSKCQAKKDSYSLWNCREDV WDDSFRGKTVDGVAYPNNRFSAVFFQPFYAGQTFGLGQINPLTALMLSDMVSRTSGYEKLDENDATAVYTAIMDPDRSLA FMAASIRKSIDDYRSIADMDISKNPGVTSTLYNVGGSQQRAAALAQKNRQRAGGGEQPLLPEENYYGWLVNDRIKDLQAL L >Mature_321_residues MRKILLAFVVALAVSAVSSSYAEAATVVPPGNRNAEQPGVPGASARRTKASNSSFERKYQKVIDLLSSDKALIAKIKSTA GRYGIDPIHMVGAIVGEHTYNVDAYDRLQSYYVKAASYAGSSFRFGYKDETIAQFLTHAQFSKCQAKKDSYSLWNCREDV WDDSFRGKTVDGVAYPNNRFSAVFFQPFYAGQTFGLGQINPLTALMLSDMVSRTSGYEKLDENDATAVYTAIMDPDRSLA FMAASIRKSIDDYRSIADMDISKNPGVTSTLYNVGGSQQRAAALAQKNRQRAGGGEQPLLPEENYYGWLVNDRIKDLQAL L
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35312; Mature: 35312
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKILLAFVVALAVSAVSSSYAEAATVVPPGNRNAEQPGVPGASARRTKASNSSFERKYQ CHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHH KVIDLLSSDKALIAKIKSTAGRYGIDPIHMVGAIVGEHTYNVDAYDRLQSYYVKAASYAG HHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC SSFRFGYKDETIAQFLTHAQFSKCQAKKDSYSLWNCREDVWDDSFRGKTVDGVAYPNNRF CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHCCCCCCCCCCCCEECCCCCE SAVFFQPFYAGQTFGLGQINPLTALMLSDMVSRTSGYEKLDENDATAVYTAIMDPDRSLA EEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCEEEEEEECCCHHHH FMAASIRKSIDDYRSIADMDISKNPGVTSTLYNVGGSQQRAAALAQKNRQRAGGGEQPLL HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC PEENYYGWLVNDRIKDLQALL CCCCCEEEEEHHHHHHHHHHC >Mature Secondary Structure MRKILLAFVVALAVSAVSSSYAEAATVVPPGNRNAEQPGVPGASARRTKASNSSFERKYQ CHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHH KVIDLLSSDKALIAKIKSTAGRYGIDPIHMVGAIVGEHTYNVDAYDRLQSYYVKAASYAG HHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC SSFRFGYKDETIAQFLTHAQFSKCQAKKDSYSLWNCREDVWDDSFRGKTVDGVAYPNNRF CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCHHHHCCCCCCCCCCCCEECCCCCE SAVFFQPFYAGQTFGLGQINPLTALMLSDMVSRTSGYEKLDENDATAVYTAIMDPDRSLA EEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCEEEEEEECCCHHHH FMAASIRKSIDDYRSIADMDISKNPGVTSTLYNVGGSQQRAAALAQKNRQRAGGGEQPLL HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC PEENYYGWLVNDRIKDLQALL CCCCCEEEEEHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA