| Definition | Kosmotoga olearia TBF 19.5.1, complete genome. |
|---|---|
| Accession | NC_012785 |
| Length | 2,302,126 |
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The map label for this gene is pheT [H]
Identifier: 239618504
GI number: 239618504
Start: 2274441
End: 2276801
Strand: Reverse
Name: pheT [H]
Synonym: Kole_2145
Alternate gene names: 239618504
Gene position: 2276801-2274441 (Counterclockwise)
Preceding gene: 239618505
Following gene: 239618503
Centisome position: 98.9
GC content: 43.67
Gene sequence:
>2361_bases ATGAGAATACCCGTCGAATGGTTGAATGAGATAATAGATCTATCAGATAAAGATGTTCAGGAGTTAACCAGTGCGCTTTC ACTCAGCGGTACAGCGGTTGAAGGTGTTGAATATCCCTGGGATTATCTTGAAGGAGCGGTAACGGGAAAAATTGAAAAGG TTATCCCCCATCCGAATGCAGATAAGCTCGTTGTCACCGAGGTGAATATAGGGGACAAACTTTTAACGGTAGTTACTGCT GATCTCAGCGTCAAACCTGAAGAATACGTGGCTGTGCTTCCTGAAGGTGGCAGGCTATGGGATCTGGAGATAAGAAAGAG GAACTTTCGCGGAGTGATGTCTGAAGGGATGTTCCTTTCATTTGAAGAGTTAAGGCTCGAGGAAAAATCAACACACATCC TCAGATTCTCCGAAGCGGTACCACTGGGAAAAGACGTTAAAGATATCCTGAAACTGAACTATCCTGTAATAGAGGTGGAG TTGACACCCAATAGAGGTGATTGTCTGTCAATGATCGGTATTGCGCGAGAGTTGCGGGCTATATACAAACGTCCTCTCAA AATCCCGGAGATTAACGAAGTCAAAGGAACAGATAAACCGGTAGAAATAAGAATTGAAGATGAGGGATGTCAAAGATACA CAGCACTTGTGATGAAAAACGTCAGGGTTAAAGAATCACCACTGTGGTTGAAGAGACGCCTCATCGCTGCAGGATTGAGA CCCTTAAACAACGTTGTTGACATCACCAACTATGTCTTATTAGAAACTGGCCACCCGGTTCACGCTTTTGATCTGGCCAA AATCCCGAACAAAAAAATCGTGGTTAGGAATGCTTCGCAGGGAGAAAAAATGACACTGCTTGATGGTAAGGTTATCGAGC TTCTTGACACGGATCTGCTGATAACGGATGGAGAAACACCGCTTGCGCTGGCCGGTATTATGGGAGGAGCGAATTCGGGG ATCTCAGAAGAGACCACCGATGTCCTATTAGAGGTAGCAGTCTTTGATCCTGTCAGAATAAGAAAAACGGCCAGGAGATT GGGTATATCTACTGATAGCTCTTACCGCTTCGAAAGAGGGATAGACGCAAAGGATTCGCTGTATGTCATCAAAAGGCTTG CCACCCTGTTGCAACAACTCGCTTCTGCCGAGATAGCCAGCGGAATAATCGACGTTGGGCAATCTTCAGAACCAGGAACC ATTCATCTGCGAAAATGGTTTGTGGATAAGGTTCTTGGAACTGTGGTTCCTATAAAAGACGTAGAAGAAATATTGCTATC TCTAGGATTTTCGCTCAAAGAATCCGGTGATGGCTGGAATGTTACCCCACCATCTCACAGGCACGATATCGATCAGGAGA TCGATCTTGTGGAAGAAATCGGCCGTATCTATGGTTACGACAAGATTGAAAGCGAGCTTCCGCGAATTACTCCAGGTGGC TGCTCACAATCTTCAGAGGTAAAAACCATAAAAAGGGTAAAAAATATCATGACTTCCCTGGGATATGACGAAGTTATCAC ATACAGTTTTATTAATCCGGATAGTATCACCTCGCTGGACAAGAATCTCAAATACACCTTACTGAAAAATCCTCTTTCAA TCGAGATGAGTGCGCTAAGACCCTCTCTCCTTTTTGGGCTTCTTGAGGTGGCTTCATACAACTATCGCAGGCAAAATAGA GATCTCAAAATATTTGAAGTGGGAAAGATTTTCTCGGTGGATCCAAAAAAGCCTGAATCGCTGTCTCTCGGATTTTTGGC CATGGGGAAAGAGAACAAGGAGGATTACACAGACAAACGCATGGTTTCTTTCTACACCTTCAAAGGAGTTGTTGAAGATG TCCTTGAATCTTACGGCGTTTCCGTTACCTTCAAAGAACCAGAAGAGAGCTGGCTGGAAAAACGCGCTTCTGCGGATATT TATATAGGCGAAAAGAAAATAGGCTTTTTCGGAGTCTTCGATAGCAGTCTAGCTGATAGGCTCTACGAAATAAAGAACGC TGAGGTCTTCATCGCTGAACTCGACCTTGAAAGCCTACTGGAAAAAGAAACGAAAAGGTGTATTAATGTAAATATGTCTC CGTTCCCGAGGGTATTCAGAGATCTTTCGATCCTCATAAGCCCTGAAATCACCTATGAAAAAATAAAAGAGACAATTCAG AAAGCCGGCAGCAAATATCTGACGGATATCAGGGTTACCGACATATATCGTGGAAAAGGAATCCCCAAGGGATTTAGGAG CATTACAATCTCTCTTACCTTCGAGTCTTTTACAGAAACGCTGAAGGAAGATGAGATCAATTCAGCGATAAACAATATTA TTAGCTCCCTGGAAGAAATTGGAGTGAAGTTACGTGGATAA
Upstream 100 bases:
>100_bases GTGTCGAAAGGATCGCGATGCTCAAATACAACCTCGGGGATATCAGAGACCTTCTCAGAAATGATCGAAGATTCCTCAAA AAGTTCATGGGGGTGAATGC
Downstream 100 bases:
>100_bases TGGTTCTCTGGAGAAAATCGTTGACGAAGTTAAAAAGAAGTTGTACGAAATATGGCGGGAAAAGTTGTTTTCCCGCCGTT TCAAAGTCGACAGAAAATCC
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 786; Mature: 786
Protein sequence:
>786_residues MRIPVEWLNEIIDLSDKDVQELTSALSLSGTAVEGVEYPWDYLEGAVTGKIEKVIPHPNADKLVVTEVNIGDKLLTVVTA DLSVKPEEYVAVLPEGGRLWDLEIRKRNFRGVMSEGMFLSFEELRLEEKSTHILRFSEAVPLGKDVKDILKLNYPVIEVE LTPNRGDCLSMIGIARELRAIYKRPLKIPEINEVKGTDKPVEIRIEDEGCQRYTALVMKNVRVKESPLWLKRRLIAAGLR PLNNVVDITNYVLLETGHPVHAFDLAKIPNKKIVVRNASQGEKMTLLDGKVIELLDTDLLITDGETPLALAGIMGGANSG ISEETTDVLLEVAVFDPVRIRKTARRLGISTDSSYRFERGIDAKDSLYVIKRLATLLQQLASAEIASGIIDVGQSSEPGT IHLRKWFVDKVLGTVVPIKDVEEILLSLGFSLKESGDGWNVTPPSHRHDIDQEIDLVEEIGRIYGYDKIESELPRITPGG CSQSSEVKTIKRVKNIMTSLGYDEVITYSFINPDSITSLDKNLKYTLLKNPLSIEMSALRPSLLFGLLEVASYNYRRQNR DLKIFEVGKIFSVDPKKPESLSLGFLAMGKENKEDYTDKRMVSFYTFKGVVEDVLESYGVSVTFKEPEESWLEKRASADI YIGEKKIGFFGVFDSSLADRLYEIKNAEVFIAELDLESLLEKETKRCINVNMSPFPRVFRDLSILISPEITYEKIKETIQ KAGSKYLTDIRVTDIYRGKGIPKGFRSITISLTFESFTETLKEDEINSAINNIISSLEEIGVKLRG
Sequences:
>Translated_786_residues MRIPVEWLNEIIDLSDKDVQELTSALSLSGTAVEGVEYPWDYLEGAVTGKIEKVIPHPNADKLVVTEVNIGDKLLTVVTA DLSVKPEEYVAVLPEGGRLWDLEIRKRNFRGVMSEGMFLSFEELRLEEKSTHILRFSEAVPLGKDVKDILKLNYPVIEVE LTPNRGDCLSMIGIARELRAIYKRPLKIPEINEVKGTDKPVEIRIEDEGCQRYTALVMKNVRVKESPLWLKRRLIAAGLR PLNNVVDITNYVLLETGHPVHAFDLAKIPNKKIVVRNASQGEKMTLLDGKVIELLDTDLLITDGETPLALAGIMGGANSG ISEETTDVLLEVAVFDPVRIRKTARRLGISTDSSYRFERGIDAKDSLYVIKRLATLLQQLASAEIASGIIDVGQSSEPGT IHLRKWFVDKVLGTVVPIKDVEEILLSLGFSLKESGDGWNVTPPSHRHDIDQEIDLVEEIGRIYGYDKIESELPRITPGG CSQSSEVKTIKRVKNIMTSLGYDEVITYSFINPDSITSLDKNLKYTLLKNPLSIEMSALRPSLLFGLLEVASYNYRRQNR DLKIFEVGKIFSVDPKKPESLSLGFLAMGKENKEDYTDKRMVSFYTFKGVVEDVLESYGVSVTFKEPEESWLEKRASADI YIGEKKIGFFGVFDSSLADRLYEIKNAEVFIAELDLESLLEKETKRCINVNMSPFPRVFRDLSILISPEITYEKIKETIQ KAGSKYLTDIRVTDIYRGKGIPKGFRSITISLTFESFTETLKEDEINSAINNIISSLEEIGVKLRG >Mature_786_residues MRIPVEWLNEIIDLSDKDVQELTSALSLSGTAVEGVEYPWDYLEGAVTGKIEKVIPHPNADKLVVTEVNIGDKLLTVVTA DLSVKPEEYVAVLPEGGRLWDLEIRKRNFRGVMSEGMFLSFEELRLEEKSTHILRFSEAVPLGKDVKDILKLNYPVIEVE LTPNRGDCLSMIGIARELRAIYKRPLKIPEINEVKGTDKPVEIRIEDEGCQRYTALVMKNVRVKESPLWLKRRLIAAGLR PLNNVVDITNYVLLETGHPVHAFDLAKIPNKKIVVRNASQGEKMTLLDGKVIELLDTDLLITDGETPLALAGIMGGANSG ISEETTDVLLEVAVFDPVRIRKTARRLGISTDSSYRFERGIDAKDSLYVIKRLATLLQQLASAEIASGIIDVGQSSEPGT IHLRKWFVDKVLGTVVPIKDVEEILLSLGFSLKESGDGWNVTPPSHRHDIDQEIDLVEEIGRIYGYDKIESELPRITPGG CSQSSEVKTIKRVKNIMTSLGYDEVITYSFINPDSITSLDKNLKYTLLKNPLSIEMSALRPSLLFGLLEVASYNYRRQNR DLKIFEVGKIFSVDPKKPESLSLGFLAMGKENKEDYTDKRMVSFYTFKGVVEDVLESYGVSVTFKEPEESWLEKRASADI YIGEKKIGFFGVFDSSLADRLYEIKNAEVFIAELDLESLLEKETKRCINVNMSPFPRVFRDLSILISPEITYEKIKETIQ KAGSKYLTDIRVTDIYRGKGIPKGFRSITISLTFESFTETLKEDEINSAINNIISSLEEIGVKLRG
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=789, Percent_Identity=36.8821292775665, Blast_Score=454, Evalue=1e-128,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 88312; Mature: 88312
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIPVEWLNEIIDLSDKDVQELTSALSLSGTAVEGVEYPWDYLEGAVTGKIEKVIPHPNA CCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEECCCCCCHHHHCCCCCCCHHHHCCCCCC DKLVVTEVNIGDKLLTVVTADLSVKPEEYVAVLPEGGRLWDLEIRKRNFRGVMSEGMFLS CEEEEEEECCCCEEEEEEEECCCCCCCCEEEEECCCCCEEEEEEHHCHHHHHHCCCCEEE FEELRLEEKSTHILRFSEAVPLGKDVKDILKLNYPVIEVELTPNRGDCLSMIGIARELRA HHHHHHHHCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH IYKRPLKIPEINEVKGTDKPVEIRIEDEGCQRYTALVMKNVRVKESPLWLKRRLIAAGLR HHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC PLNNVVDITNYVLLETGHPVHAFDLAKIPNKKIVVRNASQGEKMTLLDGKVIELLDTDLL HHHHHHHHHCEEEEECCCCEEEEEHHHCCCCEEEEEECCCCCEEEEECCHHHEEECCCEE ITDGETPLALAGIMGGANSGISEETTDVLLEVAVFDPVRIRKTARRLGISTDSSYRFERG EECCCCCEEEHEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHCC IDAKDSLYVIKRLATLLQQLASAEIASGIIDVGQSSEPGTIHLRKWFVDKVLGTVVPIKD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCHHH VEEILLSLGFSLKESGDGWNVTPPSHRHDIDQEIDLVEEIGRIYGYDKIESELPRITPGG HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCC CSQSSEVKTIKRVKNIMTSLGYDEVITYSFINPDSITSLDKNLKYTLLKNPLSIEMSALR CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCEEEEECCCCEEEHHHHH PSLLFGLLEVASYNYRRQNRDLKIFEVGKIFSVDPKKPESLSLGFLAMGKENKEDYTDKR HHHHHHHHHHHHCCHHHCCCCEEEEEECCEEECCCCCCCCCEEEEEEECCCCCCCHHHHH MVSFYTFKGVVEDVLESYGVSVTFKEPEESWLEKRASADIYIGEKKIGFFGVFDSSLADR HHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCEEECCCCCEEEEEECHHHHHH LYEIKNAEVFIAELDLESLLEKETKRCINVNMSPFPRVFRDLSILISPEITYEKIKETIQ HHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEECCCCCHHHHHHHHH KAGSKYLTDIRVTDIYRGKGIPKGFRSITISLTFESFTETLKEDEINSAINNIISSLEEI HCCCHHCCEEEEEEEECCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH GVKLRG CCEECC >Mature Secondary Structure MRIPVEWLNEIIDLSDKDVQELTSALSLSGTAVEGVEYPWDYLEGAVTGKIEKVIPHPNA CCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEECCCCCCHHHHCCCCCCCHHHHCCCCCC DKLVVTEVNIGDKLLTVVTADLSVKPEEYVAVLPEGGRLWDLEIRKRNFRGVMSEGMFLS CEEEEEEECCCCEEEEEEEECCCCCCCCEEEEECCCCCEEEEEEHHCHHHHHHCCCCEEE FEELRLEEKSTHILRFSEAVPLGKDVKDILKLNYPVIEVELTPNRGDCLSMIGIARELRA HHHHHHHHCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH IYKRPLKIPEINEVKGTDKPVEIRIEDEGCQRYTALVMKNVRVKESPLWLKRRLIAAGLR HHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC PLNNVVDITNYVLLETGHPVHAFDLAKIPNKKIVVRNASQGEKMTLLDGKVIELLDTDLL HHHHHHHHHCEEEEECCCCEEEEEHHHCCCCEEEEEECCCCCEEEEECCHHHEEECCCEE ITDGETPLALAGIMGGANSGISEETTDVLLEVAVFDPVRIRKTARRLGISTDSSYRFERG EECCCCCEEEHEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHCC IDAKDSLYVIKRLATLLQQLASAEIASGIIDVGQSSEPGTIHLRKWFVDKVLGTVVPIKD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCCHHH VEEILLSLGFSLKESGDGWNVTPPSHRHDIDQEIDLVEEIGRIYGYDKIESELPRITPGG HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCC CSQSSEVKTIKRVKNIMTSLGYDEVITYSFINPDSITSLDKNLKYTLLKNPLSIEMSALR CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCEEEEECCCCEEEHHHHH PSLLFGLLEVASYNYRRQNRDLKIFEVGKIFSVDPKKPESLSLGFLAMGKENKEDYTDKR HHHHHHHHHHHHCCHHHCCCCEEEEEECCEEECCCCCCCCCEEEEEEECCCCCCCHHHHH MVSFYTFKGVVEDVLESYGVSVTFKEPEESWLEKRASADIYIGEKKIGFFGVFDSSLADR HHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCEEECCCCCEEEEEECHHHHHH LYEIKNAEVFIAELDLESLLEKETKRCINVNMSPFPRVFRDLSILISPEITYEKIKETIQ HHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHEEEECCCCCHHHHHHHHH KAGSKYLTDIRVTDIYRGKGIPKGFRSITISLTFESFTETLKEDEINSAINNIISSLEEI HCCCHHCCEEEEEEEECCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH GVKLRG CCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]