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The map label for this gene is araQ [H]

Identifier: 239618356

GI number: 239618356

Start: 2117020

End: 2117841

Strand: Direct

Name: araQ [H]

Synonym: Kole_1994

Alternate gene names: 239618356

Gene position: 2117020-2117841 (Clockwise)

Preceding gene: 239618355

Following gene: 239618357

Centisome position: 91.96

GC content: 42.21

Gene sequence:

>822_bases
GTGAACAAGAAAGCGTTGTGGATCTTTGTTATGGTTTTCCTCTTTCTATGGGCATTCATGACCTTGTTTCCAATGTATTG
GATGTTTCAGACATCTTTGACACCAGAAGATGACATAAGTACTTTTCCGCCCCGACTGTTTCCAAGCCGTTTGACGTTGG
AAAACTTCAAGCAATTGTTTATGGAATCCAACATCTGGACATGGACCAAGAACAGTCTGATCATCACTGTGAGTATAACC
CTGTTATCACTTTTTGTTTGTTCATTAGCAGCGTATGCCTTCGCAAAAATTCCTTTCAAGGGAAGGAGTCCTATATTCAC
AATGGTGGTTGCCACCATCATGGTTCCAGCGCAGGTGACGCTCCTTCCAACATTTATACTTGTCAACAAGTTCGGAATAG
TGGATACACTCTGGGCTGTAATCCTGACATCGATTGCAAGTCCTTACACGATCTTCATGATGAGGCAGTACATGATATCG
ATACCAATCGATTATATCGATGCAGCTAGAATAGATGGTGCCTCAGAATTCAAGATATATTCGAGCATAATTCTCCCGAT
GAGCAAACCAGTATTGGGGGCCAGCGCAATATTCACTTTTATCAGCACATGGAATGGATTTTTATGGCCTTTGATTGTTT
TGAACTCTCCAGAGAAATATCCTCTTACCGTTGGGTTGGCAACGCTTCAAAATCAGAACCTGAACCAATATGGTTTACAG
ATGGCTGGAGCTGCTATATCTGCTATACCAATGATTGTGGTGTTTTTCGCTTTCCAGAGGTATTTTATGAAGGGACTGAT
GACCGGTGGTACGAAGGGTTAG

Upstream 100 bases:

>100_bases
TGTTATATTCTTTGGAATTGCTGTGGTTATATCGTTCTTCCAATTCCGTATGATGTCACAATCATACGAATTTTAATGAG
ATTCGGGGAGTTGGTAGCTG

Downstream 100 bases:

>100_bases
CGTTGTCATTATCCTAATTTTTGTGACTGTATTGATAGCTTACCCTGTCGGGATTTGGGTGGTTAGAGATCAAATTGTTT
CACCTGAGAAGATAGAGAAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MNKKALWIFVMVFLFLWAFMTLFPMYWMFQTSLTPEDDISTFPPRLFPSRLTLENFKQLFMESNIWTWTKNSLIITVSIT
LLSLFVCSLAAYAFAKIPFKGRSPIFTMVVATIMVPAQVTLLPTFILVNKFGIVDTLWAVILTSIASPYTIFMMRQYMIS
IPIDYIDAARIDGASEFKIYSSIILPMSKPVLGASAIFTFISTWNGFLWPLIVLNSPEKYPLTVGLATLQNQNLNQYGLQ
MAGAAISAIPMIVVFFAFQRYFMKGLMTGGTKG

Sequences:

>Translated_273_residues
MNKKALWIFVMVFLFLWAFMTLFPMYWMFQTSLTPEDDISTFPPRLFPSRLTLENFKQLFMESNIWTWTKNSLIITVSIT
LLSLFVCSLAAYAFAKIPFKGRSPIFTMVVATIMVPAQVTLLPTFILVNKFGIVDTLWAVILTSIASPYTIFMMRQYMIS
IPIDYIDAARIDGASEFKIYSSIILPMSKPVLGASAIFTFISTWNGFLWPLIVLNSPEKYPLTVGLATLQNQNLNQYGLQ
MAGAAISAIPMIVVFFAFQRYFMKGLMTGGTKG
>Mature_273_residues
MNKKALWIFVMVFLFLWAFMTLFPMYWMFQTSLTPEDDISTFPPRLFPSRLTLENFKQLFMESNIWTWTKNSLIITVSIT
LLSLFVCSLAAYAFAKIPFKGRSPIFTMVVATIMVPAQVTLLPTFILVNKFGIVDTLWAVILTSIASPYTIFMMRQYMIS
IPIDYIDAARIDGASEFKIYSSIILPMSKPVLGASAIFTFISTWNGFLWPLIVLNSPEKYPLTVGLATLQNQNLNQYGLQ
MAGAAISAIPMIVVFFAFQRYFMKGLMTGGTKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=274, Percent_Identity=28.8321167883212, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787571, Length=264, Percent_Identity=29.9242424242424, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790464, Length=216, Percent_Identity=26.3888888888889, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30907; Mature: 30907

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKALWIFVMVFLFLWAFMTLFPMYWMFQTSLTPEDDISTFPPRLFPSRLTLENFKQLF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
MESNIWTWTKNSLIITVSITLLSLFVCSLAAYAFAKIPFKGRSPIFTMVVATIMVPAQVT
HCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LLPTFILVNKFGIVDTLWAVILTSIASPYTIFMMRQYMISIPIDYIDAARIDGASEFKIY
HHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHH
SSIILPMSKPVLGASAIFTFISTWNGFLWPLIVLNSPEKYPLTVGLATLQNQNLNQYGLQ
HHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEHHHHCCCCCHHHHHH
MAGAAISAIPMIVVFFAFQRYFMKGLMTGGTKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNKKALWIFVMVFLFLWAFMTLFPMYWMFQTSLTPEDDISTFPPRLFPSRLTLENFKQLF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
MESNIWTWTKNSLIITVSITLLSLFVCSLAAYAFAKIPFKGRSPIFTMVVATIMVPAQVT
HCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LLPTFILVNKFGIVDTLWAVILTSIASPYTIFMMRQYMISIPIDYIDAARIDGASEFKIY
HHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHH
SSIILPMSKPVLGASAIFTFISTWNGFLWPLIVLNSPEKYPLTVGLATLQNQNLNQYGLQ
HHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEHHHHCCCCCHHHHHH
MAGAAISAIPMIVVFFAFQRYFMKGLMTGGTKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]