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The map label for this gene is yqxC [H]

Identifier: 239618278

GI number: 239618278

Start: 2038040

End: 2038846

Strand: Reverse

Name: yqxC [H]

Synonym: Kole_1915

Alternate gene names: 239618278

Gene position: 2038846-2038040 (Counterclockwise)

Preceding gene: 239618279

Following gene: 239618277

Centisome position: 88.56

GC content: 38.29

Gene sequence:

>807_bases
ATGAGTTTGAAACTTAGACTTGATGAATTGCTTGTAGCAAGAAACTTTTTCTCGAGCCGTTCGAGAGCCAGCGATATAAT
CAAACAGGGGAAGGTTTCGATTAACGGCAAGATTGTTAAGAAACCCGGGAAAAAAGTGCCTTTAGATATCAAAATAGAAA
TCAATGACCTCAAAGATTATGTTGGGAGAGGTTATCTGAAACTTGAAAAAGCATTAAAGGTTTTTCAGGTAAATCCTGAA
GAGAAGCGCGTGTGTGACATAGGTGCATCAACCGGTGGTTTCACCCAGTTGCTTCTGGAAAAAGGTGCTAAGATTGTGTA
TGCTGTTGACGTTGGAAAAAACCAACTCCACGCCTCGCTCAGAAACAACCCGAGAGTCAAGATAATGGAAGGTACAGACG
TAAGAAACCTATCTGTTGAAATGCTGAATGGTTATGTAGATATGATAACAGCCGACCTATCTTTTATCTCGCTGACAAAA
GTGGTTGAGATTTTCGGAAAACTGTTGTGTGAAAAAGGAGAATGTATTGCACTTGTGAAACCTCAGTTTGAAGCGGGACC
AGCTTTTGTACAAAAAGGAACAGTAAAAGATCCTGAGATTCATGATAAAATCCTCGAAAGAGTTATCAAAACTTTTGAAC
ATGCTGGTTTTTCTGTTTGTGGGCTTGATTATTCACCAATAGCAGGGAAAAGCGGGAATATAGAGTATCTCCTGTACTGT
AAATGGAAAACTAATGATAGTTCATTTGAATTAAATATCGTAAGTGAGGTTGTTTCGGAAGCATTTAACAAAATATTAGA
TAGATGA

Upstream 100 bases:

>100_bases
GAACCGAAAAAAACAAAAGAAATCCTTGAAGCACGGGACAGATCAAAACTTCCTAGTTCAGCTCCTGCTCATGGCTTGGT
GCTTCACAAGGTGATTTTTG

Downstream 100 bases:

>100_bases
TGGGTGAATAAAATGAAAAAAAGCCTGGTCTTTATTTTCATCGCTTTCCTTGGAATTTTTACTATCGCTCAGGAAACGCT
GGATTTCGTTCCATCCAGTG

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSLKLRLDELLVARNFFSSRSRASDIIKQGKVSINGKIVKKPGKKVPLDIKIEINDLKDYVGRGYLKLEKALKVFQVNPE
EKRVCDIGASTGGFTQLLLEKGAKIVYAVDVGKNQLHASLRNNPRVKIMEGTDVRNLSVEMLNGYVDMITADLSFISLTK
VVEIFGKLLCEKGECIALVKPQFEAGPAFVQKGTVKDPEIHDKILERVIKTFEHAGFSVCGLDYSPIAGKSGNIEYLLYC
KWKTNDSSFELNIVSEVVSEAFNKILDR

Sequences:

>Translated_268_residues
MSLKLRLDELLVARNFFSSRSRASDIIKQGKVSINGKIVKKPGKKVPLDIKIEINDLKDYVGRGYLKLEKALKVFQVNPE
EKRVCDIGASTGGFTQLLLEKGAKIVYAVDVGKNQLHASLRNNPRVKIMEGTDVRNLSVEMLNGYVDMITADLSFISLTK
VVEIFGKLLCEKGECIALVKPQFEAGPAFVQKGTVKDPEIHDKILERVIKTFEHAGFSVCGLDYSPIAGKSGNIEYLLYC
KWKTNDSSFELNIVSEVVSEAFNKILDR
>Mature_267_residues
SLKLRLDELLVARNFFSSRSRASDIIKQGKVSINGKIVKKPGKKVPLDIKIEINDLKDYVGRGYLKLEKALKVFQVNPEE
KRVCDIGASTGGFTQLLLEKGAKIVYAVDVGKNQLHASLRNNPRVKIMEGTDVRNLSVEMLNGYVDMITADLSFISLTKV
VEIFGKLLCEKGECIALVKPQFEAGPAFVQKGTVKDPEIHDKILERVIKTFEHAGFSVCGLDYSPIAGKSGNIEYLLYCK
WKTNDSSFELNIVSEVVSEAFNKILDR

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29872; Mature: 29741

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKLRLDELLVARNFFSSRSRASDIIKQGKVSINGKIVKKPGKKVPLDIKIEINDLKDY
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCEEEEEEECHHHHH
VGRGYLKLEKALKVFQVNPEEKRVCDIGASTGGFTQLLLEKGAKIVYAVDVGKNQLHASL
HCCCHHHHHHHHHHEECCCCHHHEEECCCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHH
RNNPRVKIMEGTDVRNLSVEMLNGYVDMITADLSFISLTKVVEIFGKLLCEKGECIALVK
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
PQFEAGPAFVQKGTVKDPEIHDKILERVIKTFEHAGFSVCGLDYSPIAGKSGNIEYLLYC
CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEE
KWKTNDSSFELNIVSEVVSEAFNKILDR
EEECCCCCEEEHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLKLRLDELLVARNFFSSRSRASDIIKQGKVSINGKIVKKPGKKVPLDIKIEINDLKDY
CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCEEEEEEECHHHHH
VGRGYLKLEKALKVFQVNPEEKRVCDIGASTGGFTQLLLEKGAKIVYAVDVGKNQLHASL
HCCCHHHHHHHHHHEECCCCHHHEEECCCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHH
RNNPRVKIMEGTDVRNLSVEMLNGYVDMITADLSFISLTKVVEIFGKLLCEKGECIALVK
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
PQFEAGPAFVQKGTVKDPEIHDKILERVIKTFEHAGFSVCGLDYSPIAGKSGNIEYLLYC
CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEE
KWKTNDSSFELNIVSEVVSEAFNKILDR
EEECCCCCEEEHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]