| Definition | Kosmotoga olearia TBF 19.5.1, complete genome. |
|---|---|
| Accession | NC_012785 |
| Length | 2,302,126 |
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The map label for this gene is ydfG [C]
Identifier: 239618180
GI number: 239618180
Start: 1941272
End: 1942042
Strand: Direct
Name: ydfG [C]
Synonym: Kole_1816
Alternate gene names: 239618180
Gene position: 1941272-1942042 (Clockwise)
Preceding gene: 239618177
Following gene: 239618181
Centisome position: 84.33
GC content: 42.67
Gene sequence:
>771_bases TTGAGAGCTTTAGTTACCGGAGCGTCTTCAGGGATCGGGAAGGTATTTGCGGAAGAACTTGCGAAGAGGGGATACGATCT TGTCCTTGTCGCAAGGAGAAAGGAAAGGTTAGAGAAATTGGCGCATGACCTGTCATCTATTTACGGGGTAGCTGTTGAAC CCTTTGTGGCTGATTTAACCGATTTTGATAAGCTGAGGGAACTTGTGGAGAGATTTTCAGATATAGACCTTCTCATTAAC AACGCCGGGTTTGGTTTAATTTCACCGTTTGTGGAAATAGATACTGAAAAGGGATTGAAAATGGTTGATCTGAATATAAG AGCGCTTTATTACTTAACGAAGGAATTTTCAAAGAAGATGGTAAAAAGGAATGGGAATGAAGCGGGGATAATCAACATTG CTTCTACCGCGGCATTTCAGCCAGTGCCGGGATTTGCCACTTATGCTGCCACAAAGGCTTTTGTGCTCAGTTTAACTGAA GCCTTTTCCAAAGAATTAGAAGGCAGAGTAAAGATTATGGTCGTTTGCCCCGGCCCAACAAAGACGGAATTTTTCAATGT TGCCGGCTTACCCAATATGCGTGCAAAGTTCATAATGACCCCCGAGAAAGTAGTAAAGGGATCTCTTAGAGCTTTTGAAA AGGGGAAGAGAACCTATATACCCGGTTTTTTCAATAAGCTGTTGGTTTTTCTGCAACGGTTTGTAAGCAGGGAATTAGCC TTGAATGTTGTTGCAAGGTTTTTCTATGAAAAGCCTGAGGGAGAGGTGTAA
Upstream 100 bases:
>100_bases AAAATCCAGATCTTGTTTCGCTGGGGAATTCGTTGTTAATTTTTATGGTTTTTTTCTATATACTCTTTATAAGGGCACTT TCAAATGAAGGGGTGAGATT
Downstream 100 bases:
>100_bases AGATGAGTGAGATTACGAAAGAATTTATACAGTTTCTCATTAGAGCCAAGCAGAATACATATGCGGGCGATGGGGAAGAA TCAGAACCCTCAAGACCATG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MRALVTGASSGIGKVFAEELAKRGYDLVLVARRKERLEKLAHDLSSIYGVAVEPFVADLTDFDKLRELVERFSDIDLLIN NAGFGLISPFVEIDTEKGLKMVDLNIRALYYLTKEFSKKMVKRNGNEAGIINIASTAAFQPVPGFATYAATKAFVLSLTE AFSKELEGRVKIMVVCPGPTKTEFFNVAGLPNMRAKFIMTPEKVVKGSLRAFEKGKRTYIPGFFNKLLVFLQRFVSRELA LNVVARFFYEKPEGEV
Sequences:
>Translated_256_residues MRALVTGASSGIGKVFAEELAKRGYDLVLVARRKERLEKLAHDLSSIYGVAVEPFVADLTDFDKLRELVERFSDIDLLIN NAGFGLISPFVEIDTEKGLKMVDLNIRALYYLTKEFSKKMVKRNGNEAGIINIASTAAFQPVPGFATYAATKAFVLSLTE AFSKELEGRVKIMVVCPGPTKTEFFNVAGLPNMRAKFIMTPEKVVKGSLRAFEKGKRTYIPGFFNKLLVFLQRFVSRELA LNVVARFFYEKPEGEV >Mature_256_residues MRALVTGASSGIGKVFAEELAKRGYDLVLVARRKERLEKLAHDLSSIYGVAVEPFVADLTDFDKLRELVERFSDIDLLIN NAGFGLISPFVEIDTEKGLKMVDLNIRALYYLTKEFSKKMVKRNGNEAGIINIASTAAFQPVPGFATYAATKAFVLSLTE AFSKELEGRVKIMVVCPGPTKTEFFNVAGLPNMRAKFIMTPEKVVKGSLRAFEKGKRTYIPGFFNKLLVFLQRFVSRELA LNVVARFFYEKPEGEV
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI226371731, Length=236, Percent_Identity=26.271186440678, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI109715829, Length=192, Percent_Identity=33.8541666666667, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI4557649, Length=225, Percent_Identity=32.4444444444444, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI7705855, Length=254, Percent_Identity=27.1653543307087, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI7705925, Length=179, Percent_Identity=30.7262569832402, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI32483357, Length=191, Percent_Identity=30.3664921465969, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI210032110, Length=241, Percent_Identity=24.4813278008299, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI142976729, Length=227, Percent_Identity=27.7533039647577, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI31542939, Length=192, Percent_Identity=30.7291666666667, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI126723750, Length=192, Percent_Identity=29.6875, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI40807363, Length=250, Percent_Identity=27.2, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=30.7692307692308, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=30.0546448087432, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=27.8350515463918, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI19923817, Length=214, Percent_Identity=26.1682242990654, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI5031737, Length=191, Percent_Identity=27.2251308900524, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI40254992, Length=182, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=27.2251308900524, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=31.5789473684211, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1787820, Length=190, Percent_Identity=34.2105263157895, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=30.3191489361702, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788459, Length=187, Percent_Identity=32.620320855615, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87082100, Length=186, Percent_Identity=30.6451612903226, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787526, Length=209, Percent_Identity=23.9234449760766, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786701, Length=253, Percent_Identity=27.6679841897233, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI2367175, Length=202, Percent_Identity=30.1980198019802, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789208, Length=188, Percent_Identity=28.1914893617021, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789378, Length=190, Percent_Identity=31.5789473684211, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1790717, Length=187, Percent_Identity=29.9465240641711, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI2367365, Length=184, Percent_Identity=26.6304347826087, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17562904, Length=205, Percent_Identity=29.7560975609756, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17563726, Length=238, Percent_Identity=31.5126050420168, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560220, Length=210, Percent_Identity=29.5238095238095, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=26.530612244898, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193203117, Length=217, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17562910, Length=200, Percent_Identity=30, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193203115, Length=217, Percent_Identity=29.4930875576037, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI71994604, Length=195, Percent_Identity=29.7435897435897, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562908, Length=202, Percent_Identity=29.7029702970297, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560150, Length=198, Percent_Identity=29.2929292929293, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=29.0155440414508, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17562906, Length=208, Percent_Identity=30.2884615384615, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17536651, Length=186, Percent_Identity=29.0322580645161, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI25147288, Length=184, Percent_Identity=28.804347826087, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71994600, Length=195, Percent_Identity=27.1794871794872, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17560176, Length=173, Percent_Identity=28.9017341040462, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17536025, Length=189, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17559104, Length=206, Percent_Identity=27.1844660194175, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17561402, Length=196, Percent_Identity=30.6122448979592, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17531453, Length=200, Percent_Identity=27.5, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25152911, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562990, Length=198, Percent_Identity=29.2929292929293, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17560676, Length=194, Percent_Identity=26.2886597938144, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI212646214, Length=203, Percent_Identity=30.5418719211823, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI115534694, Length=181, Percent_Identity=30.3867403314917, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI72000259, Length=211, Percent_Identity=30.8056872037915, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=28.3582089552239, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17557668, Length=202, Percent_Identity=30.1980198019802, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17559552, Length=202, Percent_Identity=30.6930693069307, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17565030, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17538486, Length=198, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560332, Length=213, Percent_Identity=29.5774647887324, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6319635, Length=233, Percent_Identity=27.0386266094421, Blast_Score=93, Evalue=5e-20, Organism=Saccharomyces cerevisiae, GI6323882, Length=191, Percent_Identity=35.0785340314136, Blast_Score=86, Evalue=4e-18, Organism=Drosophila melanogaster, GI24640442, Length=257, Percent_Identity=30.3501945525292, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI24584752, Length=167, Percent_Identity=34.7305389221557, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24643142, Length=177, Percent_Identity=34.4632768361582, Blast_Score=98, Evalue=4e-21, Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=32.994923857868, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI24584748, Length=231, Percent_Identity=29.004329004329, Blast_Score=98, Evalue=6e-21, Organism=Drosophila melanogaster, GI161076933, Length=231, Percent_Identity=29.004329004329, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI28574402, Length=184, Percent_Identity=32.6086956521739, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24584744, Length=184, Percent_Identity=32.6086956521739, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=32.2916666666667, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24644339, Length=192, Percent_Identity=31.7708333333333, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI23397609, Length=178, Percent_Identity=33.1460674157303, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI116007236, Length=209, Percent_Identity=29.6650717703349, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI281364494, Length=200, Percent_Identity=30, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=30.7291666666667, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24641388, Length=211, Percent_Identity=29.3838862559242, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24648944, Length=213, Percent_Identity=32.8638497652582, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=29.3193717277487, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24649181, Length=169, Percent_Identity=29.585798816568, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24663911, Length=194, Percent_Identity=28.3505154639175, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24639444, Length=195, Percent_Identity=30.2564102564103, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI21355631, Length=263, Percent_Identity=25.0950570342205, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28571387, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24641232, Length=195, Percent_Identity=28.7179487179487, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI21356301, Length=247, Percent_Identity=29.1497975708502, Blast_Score=66, Evalue=2e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28610; Mature: 28610
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALVTGASSGIGKVFAEELAKRGYDLVLVARRKERLEKLAHDLSSIYGVAVEPFVADLT CCCEECCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DFDKLRELVERFSDIDLLINNAGFGLISPFVEIDTEKGLKMVDLNIRALYYLTKEFSKKM CHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHH VKRNGNEAGIINIASTAAFQPVPGFATYAATKAFVLSLTEAFSKELEGRVKIMVVCPGPT HHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC KTEFFNVAGLPNMRAKFIMTPEKVVKGSLRAFEKGKRTYIPGFFNKLLVFLQRFVSRELA CCCEEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH LNVVARFFYEKPEGEV HHHHHHHHHCCCCCCC >Mature Secondary Structure MRALVTGASSGIGKVFAEELAKRGYDLVLVARRKERLEKLAHDLSSIYGVAVEPFVADLT CCCEECCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DFDKLRELVERFSDIDLLINNAGFGLISPFVEIDTEKGLKMVDLNIRALYYLTKEFSKKM CHHHHHHHHHHHCCHHEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHH VKRNGNEAGIINIASTAAFQPVPGFATYAATKAFVLSLTEAFSKELEGRVKIMVVCPGPT HHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC KTEFFNVAGLPNMRAKFIMTPEKVVKGSLRAFEKGKRTYIPGFFNKLLVFLQRFVSRELA CCCEEECCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH LNVVARFFYEKPEGEV HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA