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The map label for this gene is yggB [C]

Identifier: 239618093

GI number: 239618093

Start: 1853756

End: 1854562

Strand: Direct

Name: yggB [C]

Synonym: Kole_1725

Alternate gene names: 239618093

Gene position: 1853756-1854562 (Clockwise)

Preceding gene: 239618092

Following gene: 239618094

Centisome position: 80.52

GC content: 42.5

Gene sequence:

>807_bases
ATGAATAACTGGGTGAACGTTGTTATAAAGATTGGATTGAGTCTGGCTGTTTTAGGCATATCCTTTTATATCTCAAAAAC
GATTTTTAAGATTGTCTCCGCAGTTTCGGAAAAGAGAGGGACTCCATTAAAGGCACCCAATACTGTTCGATTGATACTCA
ATATAGTTTTCTTTCTCATAGCCGCGATGATAATCCTTTCTCTCATCTTTGAAGATCTCGTACCAATAATTACGGGAATA
GGTGTTAGCGGGATCATTGTTGGGTTTGCCCTTCAGCAACCGCTGGAAAACCTTGCTTCGGGGCTCTTCCTTCTGGTTGG
CCGTACGATAAAGGAAGGCGACGTTGTAAAAGTCGGGGATGATGTTGGCATAGTTGAGCAGGTCAATATAAACCACACCC
ACATCAGAACATTCGATGGAAAGAAGGTTCTGATACCAAATAAGATCGTCTGGACCAATCCAATCGTTCATTACTGGCCC
GGAAATATTCGGCGTATGGAGATGACTGTGGCTCTTCCTTACGAGACGGATATAGGTCTTGCGTTGAAACTCCTGCAGGA
GGTCCTCGATGAGGAGGAAATGATAGTGCAAACGGGTGTTTCTAACTTTGTCGTTTTCGATGGATTCAAGTCTTCCAGTA
TTGATTTCAGGCTTTATTTCTGGTTTGAAAGGAAAAACTACTTTGATGTTCAAAATGCTGTTGCAGAAAGAATTTATAGC
AAGTTGAAAGAAAAAGGAATATCCATCCCCTTCCCCCAACTCGATGTGCATGTGAAGGAATTTCCGGAAATGACCCCAAG
GGGTTGA

Upstream 100 bases:

>100_bases
CTGAGAAAGGACATCGTTGATGCCCTGAAGAAGTACAATGAAGAGGTGAAGAACGGGGAATTCCCGGGACCGGAAAATGT
TTTTGAGAGTGGTGGTTTTG

Downstream 100 bases:

>100_bases
TGAAATGAAAGTAGGAGAGAAACTGATATCTTTTTCAGTACTTGAATCCACCAACAAATATGCCATTTCGAACATAGATA
AGCTGCCGTCCGGAAGTGTT

Product: MscS Mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MNNWVNVVIKIGLSLAVLGISFYISKTIFKIVSAVSEKRGTPLKAPNTVRLILNIVFFLIAAMIILSLIFEDLVPIITGI
GVSGIIVGFALQQPLENLASGLFLLVGRTIKEGDVVKVGDDVGIVEQVNINHTHIRTFDGKKVLIPNKIVWTNPIVHYWP
GNIRRMEMTVALPYETDIGLALKLLQEVLDEEEMIVQTGVSNFVVFDGFKSSSIDFRLYFWFERKNYFDVQNAVAERIYS
KLKEKGISIPFPQLDVHVKEFPEMTPRG

Sequences:

>Translated_268_residues
MNNWVNVVIKIGLSLAVLGISFYISKTIFKIVSAVSEKRGTPLKAPNTVRLILNIVFFLIAAMIILSLIFEDLVPIITGI
GVSGIIVGFALQQPLENLASGLFLLVGRTIKEGDVVKVGDDVGIVEQVNINHTHIRTFDGKKVLIPNKIVWTNPIVHYWP
GNIRRMEMTVALPYETDIGLALKLLQEVLDEEEMIVQTGVSNFVVFDGFKSSSIDFRLYFWFERKNYFDVQNAVAERIYS
KLKEKGISIPFPQLDVHVKEFPEMTPRG
>Mature_268_residues
MNNWVNVVIKIGLSLAVLGISFYISKTIFKIVSAVSEKRGTPLKAPNTVRLILNIVFFLIAAMIILSLIFEDLVPIITGI
GVSGIIVGFALQQPLENLASGLFLLVGRTIKEGDVVKVGDDVGIVEQVNINHTHIRTFDGKKVLIPNKIVWTNPIVHYWP
GNIRRMEMTVALPYETDIGLALKLLQEVLDEEEMIVQTGVSNFVVFDGFKSSSIDFRLYFWFERKNYFDVQNAVAERIYS
KLKEKGISIPFPQLDVHVKEFPEMTPRG

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=212, Percent_Identity=33.9622641509434, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786670, Length=222, Percent_Identity=27.027027027027, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI2367355, Length=215, Percent_Identity=21.3953488372093, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30134; Mature: 30134

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNWVNVVIKIGLSLAVLGISFYISKTIFKIVSAVSEKRGTPLKAPNTVRLILNIVFFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
AAMIILSLIFEDLVPIITGIGVSGIIVGFALQQPLENLASGLFLLVGRTIKEGDVVKVGD
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
DVGIVEQVNINHTHIRTFDGKKVLIPNKIVWTNPIVHYWPGNIRRMEMTVALPYETDIGL
CCCCEEEECCCCEEEEEECCCEEECCCEEEECCCEEEECCCCEEEEEEEEEECCCCCHHH
ALKLLQEVLDEEEMIVQTGVSNFVVFDGFKSSSIDFRLYFWFERKNYFDVQNAVAERIYS
HHHHHHHHHCHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHH
KLKEKGISIPFPQLDVHVKEFPEMTPRG
HHHHCCCCCCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MNNWVNVVIKIGLSLAVLGISFYISKTIFKIVSAVSEKRGTPLKAPNTVRLILNIVFFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
AAMIILSLIFEDLVPIITGIGVSGIIVGFALQQPLENLASGLFLLVGRTIKEGDVVKVGD
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
DVGIVEQVNINHTHIRTFDGKKVLIPNKIVWTNPIVHYWPGNIRRMEMTVALPYETDIGL
CCCCEEEECCCCEEEEEECCCEEECCCEEEECCCEEEECCCCEEEEEEEEEECCCCCHHH
ALKLLQEVLDEEEMIVQTGVSNFVVFDGFKSSSIDFRLYFWFERKNYFDVQNAVAERIYS
HHHHHHHHHCHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHH
KLKEKGISIPFPQLDVHVKEFPEMTPRG
HHHHCCCCCCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]