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The map label for this gene is omp-alpha [H]

Identifier: 239617873

GI number: 239617873

Start: 1608669

End: 1609913

Strand: Direct

Name: omp-alpha [H]

Synonym: Kole_1500

Alternate gene names: 239617873

Gene position: 1608669-1609913 (Clockwise)

Preceding gene: 239617872

Following gene: 239617874

Centisome position: 69.88

GC content: 44.98

Gene sequence:

>1245_bases
ATGAAAAAACTTTCCTTGGTATTGGTCCTTGCCCTTGTTGGCGTGGTGTTCGCCTTTGCGGTAGACTATACGGACGTTCC
AGAGGGGCACTGGGCTTACAATGCGGTAATGAAAGCAACAGCTGCGGGATTACTTCAGGGATTCCCGGATGGTACATTCA
GAGGAACGGATAGTGTAACGAGGTATCAGTTAGCGGAAGCTATGGCAAAGCTCCTCGAGTACTCCGATGCAGGAGACGCT
AAGCTTCAGGAACTCGTTTTTGCTTTGACGAAAAAGGTAGCCGGTCTTTCCCTTGATATTTCTGAGGTTGTAAAGGGAAT
TGAGGGAACTTCAAAGAGCCTTTCTGATGCCGTTGCATTGCTCAATGCACATGACGCAGATATAACCGCTCTGAAGAAGA
AGCTTACCGATACCGAAATTACGGTCAAGCTCCTCGGTCAGGCTATCGCAAAGTTGAGGAAGGATCTTAAAGATGAAGCT
GCGGCCATTGAAGAAATCAAGGCCCAGAATTTTGTAACATCCGAGCAACTGGATGAAAAGCTCTCCATGCTTTACACGAA
AGTTCTAATGCTTCAGAAAGAAGAGAGCAAGAATAACGCCGCGATAATGGCTGAGGTAGGTAAACTCAACGAGAACGTTG
AGGTTATCTTTGATCAGGTTGACTCCAACGTGTTTTCCATAATGGGGCTTGAAAAAGAACTCGCTGGTGTTAAAGCCTCT
CTGGACAATTACGTTACCAAGGACGACTTCGAATACGTAGTGAACGTTACAAACAAACTCAGCGCGGATATGTTTACAAT
GCAAAGAAACTATGGCAAGAGAATTGGTAAGCTCGAAGAAGCTGCTTCCGATTACGCTTTGAAAGCTGATCTTGATGCCT
TGAAGAGCTCGGTGAATCAAGATATCGAGGTCATCTTTGATCAGATCGATTCCAATGTCTTCGATATCATGGATCTCGAG
AAGAAGGTAGGGAATCTTGAGGCTGCTCTGAATGCTACAAACGAAGAGCTTGCCGCTTTGAAGGCCGAAGTTGTGACACC
TGATCAGCTCTCAGAGAAACTCAACTTCCTCTACAAAAAGATAAATATCGTTGAAGCCAATGCCAAAGATGACGTTGAGA
CTCTCAAAGCAACCATTGCCGATCTTGAGGCCAAGCTTGAAGCAAGCGATAAGAAAGCAAACTTTGCAACGATCCTTTCA
ATTGTTTCAGCTGCAATAACAGCTATCGTACTTATGACCCAGTAA

Upstream 100 bases:

>100_bases
AAACTTATAGAAATCAAAACTTGAACAAGTTGGCCTGCATACTGTATAATAAATTCGTGCTTTAGGCAGATTTACAACTT
TCCGAAAGGGGGTAGGTTCC

Downstream 100 bases:

>100_bases
ACGATTGATTGATTTGTGGCCTGCTGCAAAGGAAGCGGGCCACGATTTGATTCAACGTATTGGTTTGTGTTAAAATACGA
GTGCGCATATCATTCTTTAA

Product: S-layer domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MKKLSLVLVLALVGVVFAFAVDYTDVPEGHWAYNAVMKATAAGLLQGFPDGTFRGTDSVTRYQLAEAMAKLLEYSDAGDA
KLQELVFALTKKVAGLSLDISEVVKGIEGTSKSLSDAVALLNAHDADITALKKKLTDTEITVKLLGQAIAKLRKDLKDEA
AAIEEIKAQNFVTSEQLDEKLSMLYTKVLMLQKEESKNNAAIMAEVGKLNENVEVIFDQVDSNVFSIMGLEKELAGVKAS
LDNYVTKDDFEYVVNVTNKLSADMFTMQRNYGKRIGKLEEAASDYALKADLDALKSSVNQDIEVIFDQIDSNVFDIMDLE
KKVGNLEAALNATNEELAALKAEVVTPDQLSEKLNFLYKKINIVEANAKDDVETLKATIADLEAKLEASDKKANFATILS
IVSAAITAIVLMTQ

Sequences:

>Translated_414_residues
MKKLSLVLVLALVGVVFAFAVDYTDVPEGHWAYNAVMKATAAGLLQGFPDGTFRGTDSVTRYQLAEAMAKLLEYSDAGDA
KLQELVFALTKKVAGLSLDISEVVKGIEGTSKSLSDAVALLNAHDADITALKKKLTDTEITVKLLGQAIAKLRKDLKDEA
AAIEEIKAQNFVTSEQLDEKLSMLYTKVLMLQKEESKNNAAIMAEVGKLNENVEVIFDQVDSNVFSIMGLEKELAGVKAS
LDNYVTKDDFEYVVNVTNKLSADMFTMQRNYGKRIGKLEEAASDYALKADLDALKSSVNQDIEVIFDQIDSNVFDIMDLE
KKVGNLEAALNATNEELAALKAEVVTPDQLSEKLNFLYKKINIVEANAKDDVETLKATIADLEAKLEASDKKANFATILS
IVSAAITAIVLMTQ
>Mature_414_residues
MKKLSLVLVLALVGVVFAFAVDYTDVPEGHWAYNAVMKATAAGLLQGFPDGTFRGTDSVTRYQLAEAMAKLLEYSDAGDA
KLQELVFALTKKVAGLSLDISEVVKGIEGTSKSLSDAVALLNAHDADITALKKKLTDTEITVKLLGQAIAKLRKDLKDEA
AAIEEIKAQNFVTSEQLDEKLSMLYTKVLMLQKEESKNNAAIMAEVGKLNENVEVIFDQVDSNVFSIMGLEKELAGVKAS
LDNYVTKDDFEYVVNVTNKLSADMFTMQRNYGKRIGKLEEAASDYALKADLDALKSSVNQDIEVIFDQIDSNVFDIMDLE
KKVGNLEAALNATNEELAALKAEVVTPDQLSEKLNFLYKKINIVEANAKDDVETLKATIADLEAKLEASDKKANFATILS
IVSAAITAIVLMTQ

Specific function: Links the outer membrane to the inner membrane. Long fibrous protein that could serve to separate the two membranes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SLH (S-layer homology) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001119 [H]

Pfam domain/function: PF00395 SLH [H]

EC number: NA

Molecular weight: Translated: 45127; Mature: 45127

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS01072 SLH_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLSLVLVLALVGVVFAFAVDYTDVPEGHWAYNAVMKATAAGLLQGFPDGTFRGTDSVT
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
RYQLAEAMAKLLEYSDAGDAKLQELVFALTKKVAGLSLDISEVVKGIEGTSKSLSDAVAL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHH
LNAHDADITALKKKLTDTEITVKLLGQAIAKLRKDLKDEAAAIEEIKAQNFVTSEQLDEK
HHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LSMLYTKVLMLQKEESKNNAAIMAEVGKLNENVEVIFDQVDSNVFSIMGLEKELAGVKAS
HHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LDNYVTKDDFEYVVNVTNKLSADMFTMQRNYGKRIGKLEEAASDYALKADLDALKSSVNQ
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
DIEVIFDQIDSNVFDIMDLEKKVGNLEAALNATNEELAALKAEVVTPDQLSEKLNFLYKK
HHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
INIVEANAKDDVETLKATIADLEAKLEASDKKANFATILSIVSAAITAIVLMTQ
HHEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKLSLVLVLALVGVVFAFAVDYTDVPEGHWAYNAVMKATAAGLLQGFPDGTFRGTDSVT
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
RYQLAEAMAKLLEYSDAGDAKLQELVFALTKKVAGLSLDISEVVKGIEGTSKSLSDAVAL
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHH
LNAHDADITALKKKLTDTEITVKLLGQAIAKLRKDLKDEAAAIEEIKAQNFVTSEQLDEK
HHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LSMLYTKVLMLQKEESKNNAAIMAEVGKLNENVEVIFDQVDSNVFSIMGLEKELAGVKAS
HHHHHHHHHHHHHHCCCCCCEEEEEHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LDNYVTKDDFEYVVNVTNKLSADMFTMQRNYGKRIGKLEEAASDYALKADLDALKSSVNQ
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
DIEVIFDQIDSNVFDIMDLEKKVGNLEAALNATNEELAALKAEVVTPDQLSEKLNFLYKK
HHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
INIVEANAKDDVETLKATIADLEAKLEASDKKANFATILSIVSAAITAIVLMTQ
HHEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1330536; 10360571 [H]