Click here to switch to the map view.

The map label for this gene is yagA [C]

Identifier: 239617801

GI number: 239617801

Start: 1520234

End: 1521337

Strand: Reverse

Name: yagA [C]

Synonym: Kole_1427

Alternate gene names: 239617801

Gene position: 1521337-1520234 (Counterclockwise)

Preceding gene: 239617802

Following gene: 239617800

Centisome position: 66.08

GC content: 42.66

Gene sequence:

>1104_bases
ATGTTAACGGAAAAGCAGGTCTTTGAAATCAGAATATTGTACAGAGAGGGGTTAAGCAAGCTAGCAATAGCCAGGCGCCT
TGGCATTGCTCCCAACACCGTAAAGAAATATCTTGAAAAGGAGTGGTGTCAAATGGCAAAAAGAGGTTCGAAACTGGATC
CTTTCAAGGATTACATCGAGAAAAGGCTCCAGGAGTATCCCGAACTTACAGCGACAGTGTTGTTTAAGGAATTGGTGGAG
AGAGGTTATACCGGTAAACTGACAATACTCCGGATGTATGTGTCCTCAATAAGACCCAAGGGGAAACCTGAAATTGTTGT
CAGATTCGAAACAGAACCTGGTAGACAATTTCAGGTTGATTGGGGAACGGGTACAACGGTTATTGCAGGCGAAAAGACGA
CCGTTAAGTTCTTCATTATGGTGTTGAGCTATTCACGGATGCTGTACGCGGAGATAGTACCAGATGAAAAGCTTGAGACC
TTGATCCAAGCTCATCTGCATGCCTTTGAGTACTTTGGTGGTTATCCCTCAGAAGGTCTGTACGACAACATGAAAACCGT
TGTAAAGAAGCTTCAGAAACAGAAGGAATACAACGCCAGATTCATGGATTTTGCAAACTTCTACGGCTTTAAAGTGATTA
CTCACAGGCCATATAATCCAAAAGCCAAAGGAAAGGTCGAGAGGTTGGTTCCTTACGTAAGGGAGAATATTCTTTACGGC
CAGAGTTATTCGAGCCTAACGGAATTGAAGAACGTATTAAGAGATTGGTTAGCAATAGCAAACCAGCGACTCCATTCCGA
ATTAAAAGAAACCCCTCTCGAAAGATTCGAGAGGGAAAAGAATCACCTAAACAAACTAAGTAAATCGTATCCGATTCGCA
GATTAAATACAAGACTCGTAAGAGACAAAGGCCAGATAGTCTACAAAGAAAGGGCATACCATGTTGGTAAAAAATACACA
GGGGAAAGAGTCAATCTCCAGGTGGAAGGTTCACTACTGAAGATATACGATGGCGATGAACTCATTACAGTACATCCCTT
GAAAGACCAGGTAGAAAAAAGGTCTTTGAGAGAATACCAGGCTCTTGTGGGTGATGCGGTATGA

Upstream 100 bases:

>100_bases
ATTATAAAATAGTAAAAACGTCGGTCAAAAATGAGCAAAAACATCGGTAAGAATTGAGTAGTAACATCTGAATATCTCAG
ATAGAAAAGGAGGTATTCAG

Downstream 100 bases:

>100_bases
GCTACGAAAACGTACACAGCCTGTTGAAAGAACTGAAACTGGAAGGAATCTCCAGGGTACTGGATTCTTCTCTTCAAAAC
TGGAGTAAAGGGGATAAAGA

Product: Integrase catalytic region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MLTEKQVFEIRILYREGLSKLAIARRLGIAPNTVKKYLEKEWCQMAKRGSKLDPFKDYIEKRLQEYPELTATVLFKELVE
RGYTGKLTILRMYVSSIRPKGKPEIVVRFETEPGRQFQVDWGTGTTVIAGEKTTVKFFIMVLSYSRMLYAEIVPDEKLET
LIQAHLHAFEYFGGYPSEGLYDNMKTVVKKLQKQKEYNARFMDFANFYGFKVITHRPYNPKAKGKVERLVPYVRENILYG
QSYSSLTELKNVLRDWLAIANQRLHSELKETPLERFEREKNHLNKLSKSYPIRRLNTRLVRDKGQIVYKERAYHVGKKYT
GERVNLQVEGSLLKIYDGDELITVHPLKDQVEKRSLREYQALVGDAV

Sequences:

>Translated_367_residues
MLTEKQVFEIRILYREGLSKLAIARRLGIAPNTVKKYLEKEWCQMAKRGSKLDPFKDYIEKRLQEYPELTATVLFKELVE
RGYTGKLTILRMYVSSIRPKGKPEIVVRFETEPGRQFQVDWGTGTTVIAGEKTTVKFFIMVLSYSRMLYAEIVPDEKLET
LIQAHLHAFEYFGGYPSEGLYDNMKTVVKKLQKQKEYNARFMDFANFYGFKVITHRPYNPKAKGKVERLVPYVRENILYG
QSYSSLTELKNVLRDWLAIANQRLHSELKETPLERFEREKNHLNKLSKSYPIRRLNTRLVRDKGQIVYKERAYHVGKKYT
GERVNLQVEGSLLKIYDGDELITVHPLKDQVEKRSLREYQALVGDAV
>Mature_367_residues
MLTEKQVFEIRILYREGLSKLAIARRLGIAPNTVKKYLEKEWCQMAKRGSKLDPFKDYIEKRLQEYPELTATVLFKELVE
RGYTGKLTILRMYVSSIRPKGKPEIVVRFETEPGRQFQVDWGTGTTVIAGEKTTVKFFIMVLSYSRMLYAEIVPDEKLET
LIQAHLHAFEYFGGYPSEGLYDNMKTVVKKLQKQKEYNARFMDFANFYGFKVITHRPYNPKAKGKVERLVPYVRENILYG
QSYSSLTELKNVLRDWLAIANQRLHSELKETPLERFEREKNHLNKLSKSYPIRRLNTRLVRDKGQIVYKERAYHVGKKYT
GERVNLQVEGSLLKIYDGDELITVHPLKDQVEKRSLREYQALVGDAV

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR006120
- InterPro:   IPR012337 [H]

Pfam domain/function: PF02796 HTH_7; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 43026; Mature: 43026

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTEKQVFEIRILYREGLSKLAIARRLGIAPNTVKKYLEKEWCQMAKRGSKLDPFKDYIE
CCCCHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
KRLQEYPELTATVLFKELVERGYTGKLTILRMYVSSIRPKGKPEIVVRFETEPGRQFQVD
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEE
WGTGTTVIAGEKTTVKFFIMVLSYSRMLYAEIVPDEKLETLIQAHLHAFEYFGGYPSEGL
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
YDNMKTVVKKLQKQKEYNARFMDFANFYGFKVITHRPYNPKAKGKVERLVPYVRENILYG
HHHHHHHHHHHHHHHHHCHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
QSYSSLTELKNVLRDWLAIANQRLHSELKETPLERFEREKNHLNKLSKSYPIRRLNTRLV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
RDKGQIVYKERAYHVGKKYTGERVNLQVEGSLLKIYDGDELITVHPLKDQVEKRSLREYQ
HCCCCEEEHHHHHHHCCCCCCCEEEEEEECCEEEEECCCCEEEEECCHHHHHHHHHHHHH
ALVGDAV
HHHCCCC
>Mature Secondary Structure
MLTEKQVFEIRILYREGLSKLAIARRLGIAPNTVKKYLEKEWCQMAKRGSKLDPFKDYIE
CCCCHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
KRLQEYPELTATVLFKELVERGYTGKLTILRMYVSSIRPKGKPEIVVRFETEPGRQFQVD
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEE
WGTGTTVIAGEKTTVKFFIMVLSYSRMLYAEIVPDEKLETLIQAHLHAFEYFGGYPSEGL
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
YDNMKTVVKKLQKQKEYNARFMDFANFYGFKVITHRPYNPKAKGKVERLVPYVRENILYG
HHHHHHHHHHHHHHHHHCHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
QSYSSLTELKNVLRDWLAIANQRLHSELKETPLERFEREKNHLNKLSKSYPIRRLNTRLV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
RDKGQIVYKERAYHVGKKYTGERVNLQVEGSLLKIYDGDELITVHPLKDQVEKRSLREYQ
HCCCCEEEHHHHHHHCCCCCCCEEEEEEECCEEEEECCCCEEEEECCHHHHHHHHHHHHH
ALVGDAV
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]