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The map label for this gene is ydiF [H]

Identifier: 239617547

GI number: 239617547

Start: 1232770

End: 1234584

Strand: Direct

Name: ydiF [H]

Synonym: Kole_1165

Alternate gene names: 239617547

Gene position: 1232770-1234584 (Clockwise)

Preceding gene: 239617546

Following gene: 239617550

Centisome position: 53.55

GC content: 41.6

Gene sequence:

>1815_bases
ATGATACTATCTCTCAGCAAAGTCGGACACGATTATGGTGAAGGATTCCTTTTTCAAAATTTTTCCGCTTCCGTTGCCAA
AAGAGACAAGATTGTCTTGATTGGTCCGAATGGAAGCGGAAAGTCAACGCTCTTAAAGATTATAAAAGGGCAATTACAAC
CAACAGAGGGAGAGGTCTTCCTCGCTTCTGGAACCAGAATAGGCTTTCAGAAGCAACAGCGGATTGAACATCCGGATATG
GCTCTTTTCGATTACTACATGCTGGAAAAGGAAAACCTTGACGAAGAGACGGAAGAGTATTACAGCTACGAAAGAAGGGT
AAGAAGCATTCTCAGCGGTCTTGGCTTTAAAGAAGACGCCTGGAACAGAAACCTCGGGAGTTTCAGTGGTGGAGAGTTAA
CAAGGATAGCGTTAGGAAAACTCTTTCTGGTAGATTACGATCTTTTGCTGCTCGATGAGCCCACAAACCATCTGGACCTC
GACTCCGTTGAATGGCTCCTTTCTTTCCTGAAAAGTTACCGTGGAGCTATCATTCTTGTCTCGCATGATAGATACCTGAT
TCGAAATGTAGGAAACCGTTTCTGGGAGATAAACGGTGGAAAAGTATGGGATTTTAGCGGCAACTTCGATAAATATATAG
TCGAAAGGGAAAGAATCTTAAAAACAGGCATCAGACGCCGCGAGAATTTAGAACGCGAAATAAAGCGTCTTGAAGCTGTT
GCGAAACGTTACAGGTCTTGGGGAAAGGAGAAACTGATCAAACAGGCCATCAGCAAAGAAAAACAGGCTGAAAGGCTCCG
ACAGGAATTGGAAGAAATCCAGCTTCCAGAAGAAACGGTAAGAGAACCGGAGATAAGAATTCCCGAACCGAGCAGAACGG
GTCTGGTTGTTCTGGAAGTTAAAGACCTTTCCTTCTCTTATGATGAAAAAAAGATCTTTGACAAAGCCTCTTTAACGGTT
AACAGGGGCAACAAGATAGCCCTGCTTGGCCCAAATGGAAGCGGTAAGAGCACCTTTTTGAAGATAATAACGAAAAGGAT
TCGAAATTTTTCCGGAACCGTTTCATGGGGCTACAACGTTAAATGGGGCTATCTTTCCCAGATGACCGAAGATCTAGATC
CGGAGAAAGAGGTTATTGAAGAATGCTGGCAATTAGTGTCGGATTGGCCAGACTACCAGATCAGAAGGTATCTCGGAAGG
TTTAATTTTGTTGGGGAAGATGTTTTCAAGAAAGTTGGTCAGCTCAGTGGTGGTGAGAGAACAAAACTCGCTCTCGCCAA
GCTGATACTCGAAAGACCAAATGTTCTAATAATGGATGAACCGACGAATAACCTAGATATCTGGTCCATCCAGAGTCTGG
AAAAAGTGCTGAAAGAATACAAAGGAGCTTTGCTTCTTGTATCACACGATAGGGAATTCACAAATAACGTGTGTCAAAGT
TTCTACTCTATAAAGAACTTTAAGATCCGTCCAGTTTCATCGATCGAGGAATACCTTTCCTGGGGAAAAATCTCTTTGCC
TGAAAACAATAAAGTCCAGAGATCCAACATGGACTATACAGAGAAAAAGCGTATAAAAAATAAGCTAAAATCCCTTCTCA
GGGATATTGAAGATCTGAACAGCAAAGAAGAGGAGCTTGAAAAGCAAATAGATGAACTCAACGACGAAATAAAAATATAT
AGCACAGATTTTAACAAACTCCAGCAACTTCACGAAGAGCTTTCTAAAAAAGAAGAAGATCTTCTCGAACTATTGCAAAA
GCGAGAAGATCTGGAAGAAAAAATTAGAGAACTAAAAGAATTGGTTGAAAGTTAA

Upstream 100 bases:

>100_bases
GGCGAAGAAGAAAGGCGTACTAAAAAGGAGCGGGTGAGCTTTCCCCGCTCTTTTCTACGTCTGCTAAAATATAATGGTAT
AAAAACTTACGGAGGTAATT

Downstream 100 bases:

>100_bases
ATCAGATGGGATGAATCATTGTTGCAAGTATAAGAACCGTTGAGAATATCAAAAAGATATTGAAATAGCTTCCACCAATT
ACCCTTTTGACGTCTCTTTC

Product: ABC transporter related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MILSLSKVGHDYGEGFLFQNFSASVAKRDKIVLIGPNGSGKSTLLKIIKGQLQPTEGEVFLASGTRIGFQKQQRIEHPDM
ALFDYYMLEKENLDEETEEYYSYERRVRSILSGLGFKEDAWNRNLGSFSGGELTRIALGKLFLVDYDLLLLDEPTNHLDL
DSVEWLLSFLKSYRGAIILVSHDRYLIRNVGNRFWEINGGKVWDFSGNFDKYIVERERILKTGIRRRENLEREIKRLEAV
AKRYRSWGKEKLIKQAISKEKQAERLRQELEEIQLPEETVREPEIRIPEPSRTGLVVLEVKDLSFSYDEKKIFDKASLTV
NRGNKIALLGPNGSGKSTFLKIITKRIRNFSGTVSWGYNVKWGYLSQMTEDLDPEKEVIEECWQLVSDWPDYQIRRYLGR
FNFVGEDVFKKVGQLSGGERTKLALAKLILERPNVLIMDEPTNNLDIWSIQSLEKVLKEYKGALLLVSHDREFTNNVCQS
FYSIKNFKIRPVSSIEEYLSWGKISLPENNKVQRSNMDYTEKKRIKNKLKSLLRDIEDLNSKEEELEKQIDELNDEIKIY
STDFNKLQQLHEELSKKEEDLLELLQKREDLEEKIRELKELVES

Sequences:

>Translated_604_residues
MILSLSKVGHDYGEGFLFQNFSASVAKRDKIVLIGPNGSGKSTLLKIIKGQLQPTEGEVFLASGTRIGFQKQQRIEHPDM
ALFDYYMLEKENLDEETEEYYSYERRVRSILSGLGFKEDAWNRNLGSFSGGELTRIALGKLFLVDYDLLLLDEPTNHLDL
DSVEWLLSFLKSYRGAIILVSHDRYLIRNVGNRFWEINGGKVWDFSGNFDKYIVERERILKTGIRRRENLEREIKRLEAV
AKRYRSWGKEKLIKQAISKEKQAERLRQELEEIQLPEETVREPEIRIPEPSRTGLVVLEVKDLSFSYDEKKIFDKASLTV
NRGNKIALLGPNGSGKSTFLKIITKRIRNFSGTVSWGYNVKWGYLSQMTEDLDPEKEVIEECWQLVSDWPDYQIRRYLGR
FNFVGEDVFKKVGQLSGGERTKLALAKLILERPNVLIMDEPTNNLDIWSIQSLEKVLKEYKGALLLVSHDREFTNNVCQS
FYSIKNFKIRPVSSIEEYLSWGKISLPENNKVQRSNMDYTEKKRIKNKLKSLLRDIEDLNSKEEELEKQIDELNDEIKIY
STDFNKLQQLHEELSKKEEDLLELLQKREDLEEKIRELKELVES
>Mature_604_residues
MILSLSKVGHDYGEGFLFQNFSASVAKRDKIVLIGPNGSGKSTLLKIIKGQLQPTEGEVFLASGTRIGFQKQQRIEHPDM
ALFDYYMLEKENLDEETEEYYSYERRVRSILSGLGFKEDAWNRNLGSFSGGELTRIALGKLFLVDYDLLLLDEPTNHLDL
DSVEWLLSFLKSYRGAIILVSHDRYLIRNVGNRFWEINGGKVWDFSGNFDKYIVERERILKTGIRRRENLEREIKRLEAV
AKRYRSWGKEKLIKQAISKEKQAERLRQELEEIQLPEETVREPEIRIPEPSRTGLVVLEVKDLSFSYDEKKIFDKASLTV
NRGNKIALLGPNGSGKSTFLKIITKRIRNFSGTVSWGYNVKWGYLSQMTEDLDPEKEVIEECWQLVSDWPDYQIRRYLGR
FNFVGEDVFKKVGQLSGGERTKLALAKLILERPNVLIMDEPTNNLDIWSIQSLEKVLKEYKGALLLVSHDREFTNNVCQS
FYSIKNFKIRPVSSIEEYLSWGKISLPENNKVQRSNMDYTEKKRIKNKLKSLLRDIEDLNSKEEELEKQIDELNDEIKIY
STDFNKLQQLHEELSKKEEDLLELLQKREDLEEKIRELKELVES

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI27881506, Length=478, Percent_Identity=31.3807531380753, Blast_Score=203, Evalue=3e-52,
Organism=Homo sapiens, GI10947137, Length=478, Percent_Identity=31.3807531380753, Blast_Score=203, Evalue=4e-52,
Organism=Homo sapiens, GI148612853, Length=499, Percent_Identity=28.4569138276553, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI10947135, Length=493, Percent_Identity=30.4259634888438, Blast_Score=191, Evalue=2e-48,
Organism=Homo sapiens, GI69354671, Length=493, Percent_Identity=30.4259634888438, Blast_Score=191, Evalue=2e-48,
Organism=Homo sapiens, GI27262624, Length=265, Percent_Identity=26.7924528301887, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI27262626, Length=265, Percent_Identity=26.7924528301887, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI1789751, Length=581, Percent_Identity=30.4647160068847, Blast_Score=268, Evalue=1e-72,
Organism=Escherichia coli, GI1787041, Length=534, Percent_Identity=31.8352059925094, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI1787182, Length=647, Percent_Identity=28.129829984544, Blast_Score=254, Evalue=2e-68,
Organism=Escherichia coli, GI2367384, Length=564, Percent_Identity=31.3829787234043, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI1786975, Length=482, Percent_Identity=25.7261410788382, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788165, Length=182, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1790534, Length=200, Percent_Identity=27.5, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786698, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=27.536231884058, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1789891, Length=230, Percent_Identity=22.1739130434783, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788761, Length=216, Percent_Identity=25, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788053, Length=195, Percent_Identity=30.2564102564103, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787164, Length=248, Percent_Identity=25.8064516129032, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787758, Length=179, Percent_Identity=26.2569832402235, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=511, Percent_Identity=30.1369863013699, Blast_Score=199, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17559834, Length=521, Percent_Identity=28.2149712092131, Blast_Score=199, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI17555318, Length=487, Percent_Identity=29.1581108829569, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI115533592, Length=245, Percent_Identity=29.3877551020408, Blast_Score=75, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6320874, Length=495, Percent_Identity=32.5252525252525, Blast_Score=222, Evalue=2e-58,
Organism=Saccharomyces cerevisiae, GI6321121, Length=382, Percent_Identity=32.1989528795811, Blast_Score=212, Evalue=2e-55,
Organism=Saccharomyces cerevisiae, GI6324314, Length=365, Percent_Identity=24.6575342465753, Blast_Score=110, Evalue=7e-25,
Organism=Saccharomyces cerevisiae, GI6325030, Length=367, Percent_Identity=26.158038147139, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6323278, Length=375, Percent_Identity=23.7333333333333, Blast_Score=107, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24641342, Length=520, Percent_Identity=31.5384615384615, Blast_Score=236, Evalue=3e-62,
Organism=Drosophila melanogaster, GI24666836, Length=517, Percent_Identity=30.7543520309478, Blast_Score=221, Evalue=1e-57,
Organism=Drosophila melanogaster, GI24642252, Length=479, Percent_Identity=28.8100208768267, Blast_Score=200, Evalue=2e-51,
Organism=Drosophila melanogaster, GI18859989, Length=479, Percent_Identity=28.8100208768267, Blast_Score=200, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 70498; Mature: 70498

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSLSKVGHDYGEGFLFQNFSASVAKRDKIVLIGPNGSGKSTLLKIIKGQLQPTEGEVF
CEEECHHHCCHHCCCCEEECCCHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEE
LASGTRIGFQKQQRIEHPDMALFDYYMLEKENLDEETEEYYSYERRVRSILSGLGFKEDA
EECCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
WNRNLGSFSGGELTRIALGKLFLVDYDLLLLDEPTNHLDLDSVEWLLSFLKSYRGAIILV
CCCCCCCCCCCCCHHHHHHHHHEEECEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEE
SHDRYLIRNVGNRFWEINGGKVWDFSGNFDKYIVERERILKTGIRRRENLEREIKRLEAV
ECCHHHHHHHCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKRYRSWGKEKLIKQAISKEKQAERLRQELEEIQLPEETVREPEIRIPEPSRTGLVVLEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEEEE
KDLSFSYDEKKIFDKASLTVNRGNKIALLGPNGSGKSTFLKIITKRIRNFSGTVSWGYNV
ECCCCCCCHHHHHHHHCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCC
KWGYLSQMTEDLDPEKEVIEECWQLVSDWPDYQIRRYLGRFNFVGEDVFKKVGQLSGGER
CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCH
TKLALAKLILERPNVLIMDEPTNNLDIWSIQSLEKVLKEYKGALLLVSHDREFTNNVCQS
HHHHHHHHHHHCCCEEEEECCCCCCCEEEHHHHHHHHHHHCCEEEEEECCHHHHHHHHHH
FYSIKNFKIRPVSSIEEYLSWGKISLPENNKVQRSNMDYTEKKRIKNKLKSLLRDIEDLN
HHHHCCCEECCHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SKEEELEKQIDELNDEIKIYSTDFNKLQQLHEELSKKEEDLLELLQKREDLEEKIRELKE
CHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVES
HHCC
>Mature Secondary Structure
MILSLSKVGHDYGEGFLFQNFSASVAKRDKIVLIGPNGSGKSTLLKIIKGQLQPTEGEVF
CEEECHHHCCHHCCCCEEECCCHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEE
LASGTRIGFQKQQRIEHPDMALFDYYMLEKENLDEETEEYYSYERRVRSILSGLGFKEDA
EECCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
WNRNLGSFSGGELTRIALGKLFLVDYDLLLLDEPTNHLDLDSVEWLLSFLKSYRGAIILV
CCCCCCCCCCCCCHHHHHHHHHEEECEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEE
SHDRYLIRNVGNRFWEINGGKVWDFSGNFDKYIVERERILKTGIRRRENLEREIKRLEAV
ECCHHHHHHHCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKRYRSWGKEKLIKQAISKEKQAERLRQELEEIQLPEETVREPEIRIPEPSRTGLVVLEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCEEEEEE
KDLSFSYDEKKIFDKASLTVNRGNKIALLGPNGSGKSTFLKIITKRIRNFSGTVSWGYNV
ECCCCCCCHHHHHHHHCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCC
KWGYLSQMTEDLDPEKEVIEECWQLVSDWPDYQIRRYLGRFNFVGEDVFKKVGQLSGGER
CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCH
TKLALAKLILERPNVLIMDEPTNNLDIWSIQSLEKVLKEYKGALLLVSHDREFTNNVCQS
HHHHHHHHHHHCCCEEEEECCCCCCCEEEHHHHHHHHHHHCCEEEEEECCHHHHHHHHHH
FYSIKNFKIRPVSSIEEYLSWGKISLPENNKVQRSNMDYTEKKRIKNKLKSLLRDIEDLN
HHHHCCCEECCHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SKEEELEKQIDELNDEIKIYSTDFNKLQQLHEELSKKEEDLLELLQKREDLEEKIRELKE
CHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVES
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]