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The map label for this gene is rtcB [H]

Identifier: 239617433

GI number: 239617433

Start: 1113249

End: 1114400

Strand: Direct

Name: rtcB [H]

Synonym: Kole_1045

Alternate gene names: 239617433

Gene position: 1113249-1114400 (Clockwise)

Preceding gene: 239617432

Following gene: 239617443

Centisome position: 48.36

GC content: 44.62

Gene sequence:

>1152_bases
ATGAACTTTTACAGTCCTAAACTAAAGGCAAAGTTCTGGATACCCGTGAAAGAAATTGAAGAAGAGGCGATGCAGCAAAT
CAGGAATCTTTCGGAAATTCCAGACGTTTTTAGATGGATAGCAGTAATGCCGGATGTTCATCCGGGTTATGGTATGCCCA
TAGGCTGTGTAGTAGCGCTGAAGGAAAATGTTATTCCTTATGCCGTTGGTATGGATATAGGATGTGGGGTTGTTACTGTC
AAAACAGACCTAACCGCAGACATGGTGATGAAATATCGCCAGCAGATACTCAAGTTATTTCTTGAAAAAATACCTGTTGG
CTTCAAGTGGAGAAAAAAAGCACTCGCAAGTGATTTCTGGAAGCGAGAACCCGCCGGGCCCATCACTGAAAGGGAACGAA
AAAATGCCGAAAAGCAGCTTGGAACCCTTGGAGGAGGAAACCATTTTATAGAGATTCAAAAGGATGAGCTTGGGAATATT
TACCTTACAGTGCATAGCGGTTCGCGTAACCTTGGAAAACAGGTAGCGAGTTATTATGACAAAATCGCCAGGGAATACTG
TAAAAAGCGGGGCATAAAGCCACCTCCCGGGCTGGCCTGGTTGCCGAGGAATAGCAAATCCGGAAGACAATATCTTGCAG
AGATGGAGTTTTGCATGGCCTTCGCTTCAGAAAATCGCCGTTTGCTGGTGGCATCCGCATTAGAAGTAATGCGGTACTTT
TTCCCCGAAATGAAAGAGCTGGAAAGAATTGAGACAGTTCACAATTATGCGAGTCTTGAGAGGCATTATGGAGAAAAGGT
GCTTGTCCATCGAAAAGGAGCGGTGCTGGCAAAAGGTAAAGTGATAATTCCCGGTTCCATGGGGAGTCCCACCTACATAG
CCAAAGGCCTGTGCAATCCTGAAAGTTTTTGTTCTTGCTCTCACGGTGCGGGAAGGGTGCTGGGCAGGCATGAAGCGAAA
AGAAAGCTCAATTTTGCCGAAGTGAAGAAAGATCTGGATGAGAGAAATGTCGTTCTTATGACTCCGGATAAAGGTGCTGT
AATAGAAGAAGCCAGAGTAGCTTACAAAGACATAGATAAAGTTATGGATTATCAAAAGGATCTGGTGGAACGATTGGTAA
AATTAACCCCTCTTGCTGTGATTAAAGGCTGA

Upstream 100 bases:

>100_bases
CTCGGATCTCGAACACCGGATCTCGGTTTTTGTATTAGCGCCTACTTTTTTCTCTCGAGTGATAGAATCTTACTGAACCC
AAATAAATCGGGGTGATGTT

Downstream 100 bases:

>100_bases
AAGTTGTTCACTTCACCTCCATATTCTTTTGTTCTTCTGATACTTTTTCAACAATTCGCAGAGCTTTGTCAAGCATAGGA
TCTGCTTCACCAATTAGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MNFYSPKLKAKFWIPVKEIEEEAMQQIRNLSEIPDVFRWIAVMPDVHPGYGMPIGCVVALKENVIPYAVGMDIGCGVVTV
KTDLTADMVMKYRQQILKLFLEKIPVGFKWRKKALASDFWKREPAGPITERERKNAEKQLGTLGGGNHFIEIQKDELGNI
YLTVHSGSRNLGKQVASYYDKIAREYCKKRGIKPPPGLAWLPRNSKSGRQYLAEMEFCMAFASENRRLLVASALEVMRYF
FPEMKELERIETVHNYASLERHYGEKVLVHRKGAVLAKGKVIIPGSMGSPTYIAKGLCNPESFCSCSHGAGRVLGRHEAK
RKLNFAEVKKDLDERNVVLMTPDKGAVIEEARVAYKDIDKVMDYQKDLVERLVKLTPLAVIKG

Sequences:

>Translated_383_residues
MNFYSPKLKAKFWIPVKEIEEEAMQQIRNLSEIPDVFRWIAVMPDVHPGYGMPIGCVVALKENVIPYAVGMDIGCGVVTV
KTDLTADMVMKYRQQILKLFLEKIPVGFKWRKKALASDFWKREPAGPITERERKNAEKQLGTLGGGNHFIEIQKDELGNI
YLTVHSGSRNLGKQVASYYDKIAREYCKKRGIKPPPGLAWLPRNSKSGRQYLAEMEFCMAFASENRRLLVASALEVMRYF
FPEMKELERIETVHNYASLERHYGEKVLVHRKGAVLAKGKVIIPGSMGSPTYIAKGLCNPESFCSCSHGAGRVLGRHEAK
RKLNFAEVKKDLDERNVVLMTPDKGAVIEEARVAYKDIDKVMDYQKDLVERLVKLTPLAVIKG
>Mature_383_residues
MNFYSPKLKAKFWIPVKEIEEEAMQQIRNLSEIPDVFRWIAVMPDVHPGYGMPIGCVVALKENVIPYAVGMDIGCGVVTV
KTDLTADMVMKYRQQILKLFLEKIPVGFKWRKKALASDFWKREPAGPITERERKNAEKQLGTLGGGNHFIEIQKDELGNI
YLTVHSGSRNLGKQVASYYDKIAREYCKKRGIKPPPGLAWLPRNSKSGRQYLAEMEFCMAFASENRRLLVASALEVMRYF
FPEMKELERIETVHNYASLERHYGEKVLVHRKGAVLAKGKVIIPGSMGSPTYIAKGLCNPESFCSCSHGAGRVLGRHEAK
RKLNFAEVKKDLDERNVVLMTPDKGAVIEEARVAYKDIDKVMDYQKDLVERLVKLTPLAVIKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=442, Percent_Identity=30.0904977375566, Blast_Score=160, Evalue=3e-39,
Organism=Escherichia coli, GI2367224, Length=399, Percent_Identity=36.0902255639098, Blast_Score=232, Evalue=3e-62,
Organism=Caenorhabditis elegans, GI17506665, Length=441, Percent_Identity=28.7981859410431, Blast_Score=157, Evalue=1e-38,
Organism=Drosophila melanogaster, GI24585217, Length=441, Percent_Identity=29.4784580498866, Blast_Score=153, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 43409; Mature: 43409

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFYSPKLKAKFWIPVKEIEEEAMQQIRNLSEIPDVFRWIAVMPDVHPGYGMPIGCVVAL
CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
KENVIPYAVGMDIGCGVVTVKTDLTADMVMKYRQQILKLFLEKIPVGFKWRKKALASDFW
HCCCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KREPAGPITERERKNAEKQLGTLGGGNHFIEIQKDELGNIYLTVHSGSRNLGKQVASYYD
HCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
KIAREYCKKRGIKPPPGLAWLPRNSKSGRQYLAEMEFCMAFASENRRLLVASALEVMRYF
HHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHH
FPEMKELERIETVHNYASLERHYGEKVLVHRKGAVLAKGKVIIPGSMGSPTYIAKGLCNP
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCEEEECCCCCCCHHHHHCCCCH
ESFCSCSHGAGRVLGRHEAKRKLNFAEVKKDLDERNVVLMTPDKGAVIEEARVAYKDIDK
HHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
VMDYQKDLVERLVKLTPLAVIKG
HHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MNFYSPKLKAKFWIPVKEIEEEAMQQIRNLSEIPDVFRWIAVMPDVHPGYGMPIGCVVAL
CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
KENVIPYAVGMDIGCGVVTVKTDLTADMVMKYRQQILKLFLEKIPVGFKWRKKALASDFW
HCCCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KREPAGPITERERKNAEKQLGTLGGGNHFIEIQKDELGNIYLTVHSGSRNLGKQVASYYD
HCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
KIAREYCKKRGIKPPPGLAWLPRNSKSGRQYLAEMEFCMAFASENRRLLVASALEVMRYF
HHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHH
FPEMKELERIETVHNYASLERHYGEKVLVHRKGAVLAKGKVIIPGSMGSPTYIAKGLCNP
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCEEEECCCCCCCHHHHHCCCCH
ESFCSCSHGAGRVLGRHEAKRKLNFAEVKKDLDERNVVLMTPDKGAVIEEARVAYKDIDK
HHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
VMDYQKDLVERLVKLTPLAVIKG
HHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]