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The map label for this gene is rnfB [H]

Identifier: 239617299

GI number: 239617299

Start: 959808

End: 960500

Strand: Direct

Name: rnfB [H]

Synonym: Kole_0908

Alternate gene names: 239617299

Gene position: 959808-960500 (Clockwise)

Preceding gene: 239617298

Following gene: 239617300

Centisome position: 41.69

GC content: 43.72

Gene sequence:

>693_bases
ATGATAATAGTTTATTCGGCCTTGATTTTAGGAGTTCTAGGTTTTGTTTTCGGTACATTTCTCGCTTTTGCAGCGGCAAA
ATTCGCTGTAAAAGAAAATCCGAAAGAGAAATTAATTGAGGTTGTACTCCCTGGAATAAATTGTGGGGCCTGTGGATATC
CCGGATGTTCCGGATTCGCAAAAGCGGTTAGCGAAAGTAAAGCGTCTGTTGATGGTTGTATTCCCGGGAGAAGAGCCGGC
GTTCCGGAGAAAATAAAGAAACTCCTTGAAGCCTCTGATGACGCTATAGAAAAGATATGGGAAAAAGCCGGTGGCGATCC
AGAAGCAGCTGTTAAAGAGTTCTTCGCTGGTGCAGCGCCAAGCGAAGAAACAAAGCCCAAGAAACCTTCAAGGCCAAGCA
AAGAAGAAGTGGAAAAGTACAGAGCAATGCTTGATGAAAAACCGGTTGCCAAGGCAGTTTATTCCATTCTTCCAAAAATA
GACTGCGGTCTCTGCGGGTATCCCGGTTGTGCAGCTTTCGCTATTAAAATAGTGGAGGAGAAAGAAAACCCGAGTAAGTG
TATCCCCGGTAAACGTCAGAAAGTTGAGGAAAAGGTGAAGAATATCAAGGAAAAATCCCCGGAAGAGATTAAAAAAATCG
TAGAGGAAGCCAAAGGAGATATAGAGGAACTGAAGAAAAGATTCGAGGTGTAG

Upstream 100 bases:

>100_bases
GCTTTTAAAGGTACCGCAAGCGCTCTCATAACAGCCGGCTTGCTTTCAATGGCGTTCACAGGATTCCAGGGCCTCGTGAA
GCTGTGAGGGGGTATGGTGG

Downstream 100 bases:

>100_bases
CTCTTGAAGAAAATAGCGATAGTAGGTTCCACAGGTTCCATTGGAACTCAAACACTTGAAGTGATTAGAAAACTTGATAA
TTTTAGAGTTGTGGCCATGG

Product: Fe-S cluster domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MIIVYSALILGVLGFVFGTFLAFAAAKFAVKENPKEKLIEVVLPGINCGACGYPGCSGFAKAVSESKASVDGCIPGRRAG
VPEKIKKLLEASDDAIEKIWEKAGGDPEAAVKEFFAGAAPSEETKPKKPSRPSKEEVEKYRAMLDEKPVAKAVYSILPKI
DCGLCGYPGCAAFAIKIVEEKENPSKCIPGKRQKVEEKVKNIKEKSPEEIKKIVEEAKGDIEELKKRFEV

Sequences:

>Translated_230_residues
MIIVYSALILGVLGFVFGTFLAFAAAKFAVKENPKEKLIEVVLPGINCGACGYPGCSGFAKAVSESKASVDGCIPGRRAG
VPEKIKKLLEASDDAIEKIWEKAGGDPEAAVKEFFAGAAPSEETKPKKPSRPSKEEVEKYRAMLDEKPVAKAVYSILPKI
DCGLCGYPGCAAFAIKIVEEKENPSKCIPGKRQKVEEKVKNIKEKSPEEIKKIVEEAKGDIEELKKRFEV
>Mature_230_residues
MIIVYSALILGVLGFVFGTFLAFAAAKFAVKENPKEKLIEVVLPGINCGACGYPGCSGFAKAVSESKASVDGCIPGRRAG
VPEKIKKLLEASDDAIEKIWEKAGGDPEAAVKEFFAGAAPSEETKPKKPSRPSKEEVEKYRAMLDEKPVAKAVYSILPKI
DCGLCGYPGCAAFAIKIVEEKENPSKCIPGKRQKVEEKVKNIKEKSPEEIKKIVEEAKGDIEELKKRFEV

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=81, Percent_Identity=40.7407407407407, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 24921; Mature: 24921

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVYSALILGVLGFVFGTFLAFAAAKFAVKENPKEKLIEVVLPGINCGACGYPGCSGFA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHH
KAVSESKASVDGCIPGRRAGVPEKIKKLLEASDDAIEKIWEKAGGDPEAAVKEFFAGAAP
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
SEETKPKKPSRPSKEEVEKYRAMLDEKPVAKAVYSILPKIDCGLCGYPGCAAFAIKIVEE
CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
KENPSKCIPGKRQKVEEKVKNIKEKSPEEIKKIVEEAKGDIEELKKRFEV
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MIIVYSALILGVLGFVFGTFLAFAAAKFAVKENPKEKLIEVVLPGINCGACGYPGCSGFA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHH
KAVSESKASVDGCIPGRRAGVPEKIKKLLEASDDAIEKIWEKAGGDPEAAVKEFFAGAAP
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCC
SEETKPKKPSRPSKEEVEKYRAMLDEKPVAKAVYSILPKIDCGLCGYPGCAAFAIKIVEE
CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
KENPSKCIPGKRQKVEEKVKNIKEKSPEEIKKIVEEAKGDIEELKKRFEV
CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA